Hb_002289_130

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2289: 136398-140560
Sequence    

Annotation

kegg
ID rcu:RCOM_0750140
description arsenite inducuble RNA associated protein aip-1, putative
nr
ID XP_002529612.1
description arsenite inducuble RNA associated protein aip-1, putative [Ricinus communis]
swissprot
ID Q8VZ42
description Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Arabidopsis thaliana GN=SAP11 PE=2 SV=1
trembl
ID B9SUE3
description Arsenite inducuble RNA associated protein aip-1, putative OS=Ricinus communis GN=RCOM_0750140 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger an1 and c2h2 domain-containing stress-associated protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_130 0.0 transcription factor TF Family: C2H2 arsenite inducuble RNA associated protein aip-1, putative [Ricinus communis]
2 Hb_000161_020 0.2145759919 - - hypothetical protein CICLE_v10003356mg, partial [Citrus clementina]
3 Hb_001545_210 0.2151474967 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
4 Hb_001242_090 0.2635906095 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
5 Hb_177179_010 0.2748976919 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
6 Hb_001135_280 0.2760332204 - - -
7 Hb_003688_170 0.2797794114 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
8 Hb_000590_040 0.2876612487 - - hypothetical protein MPER_09217 [Moniliophthora perniciosa FA553]
9 Hb_004881_100 0.2948693534 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
10 Hb_011063_020 0.2993852281 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
11 Hb_002733_030 0.3154349126 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
12 Hb_001506_010 0.3280888685 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
13 Hb_000331_150 0.3288391209 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_001817_030 0.3332278178 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
15 Hb_003881_050 0.3440074399 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
16 Hb_076795_010 0.3456476444 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
17 Hb_003069_020 0.3458123464 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002513_030 0.3458667824 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
19 Hb_010317_020 0.3513214946 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
20 Hb_000031_350 0.3519850075 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X2 [Cucumis melo]

Gene co-expression network

sample Hb_002289_130 Hb_002289_130 Hb_000161_020 Hb_000161_020 Hb_002289_130--Hb_000161_020 Hb_001545_210 Hb_001545_210 Hb_002289_130--Hb_001545_210 Hb_001242_090 Hb_001242_090 Hb_002289_130--Hb_001242_090 Hb_177179_010 Hb_177179_010 Hb_002289_130--Hb_177179_010 Hb_001135_280 Hb_001135_280 Hb_002289_130--Hb_001135_280 Hb_003688_170 Hb_003688_170 Hb_002289_130--Hb_003688_170 Hb_000161_020--Hb_001135_280 Hb_000161_020--Hb_003688_170 Hb_011063_020 Hb_011063_020 Hb_000161_020--Hb_011063_020 Hb_000590_040 Hb_000590_040 Hb_000161_020--Hb_000590_040 Hb_006029_020 Hb_006029_020 Hb_000161_020--Hb_006029_020 Hb_001545_210--Hb_177179_010 Hb_001545_210--Hb_001242_090 Hb_002513_030 Hb_002513_030 Hb_001545_210--Hb_002513_030 Hb_054127_050 Hb_054127_050 Hb_001545_210--Hb_054127_050 Hb_130194_010 Hb_130194_010 Hb_001545_210--Hb_130194_010 Hb_003688_160 Hb_003688_160 Hb_001242_090--Hb_003688_160 Hb_073452_010 Hb_073452_010 Hb_001242_090--Hb_073452_010 Hb_003881_050 Hb_003881_050 Hb_001242_090--Hb_003881_050 Hb_000251_090 Hb_000251_090 Hb_001242_090--Hb_000251_090 Hb_052689_010 Hb_052689_010 Hb_001242_090--Hb_052689_010 Hb_001242_090--Hb_003688_170 Hb_177179_010--Hb_002513_030 Hb_177179_010--Hb_001242_090 Hb_003226_290 Hb_003226_290 Hb_177179_010--Hb_003226_290 Hb_006280_010 Hb_006280_010 Hb_177179_010--Hb_006280_010 Hb_004881_100 Hb_004881_100 Hb_177179_010--Hb_004881_100 Hb_000513_070 Hb_000513_070 Hb_001135_280--Hb_000513_070 Hb_010436_030 Hb_010436_030 Hb_001135_280--Hb_010436_030 Hb_001135_280--Hb_001242_090 Hb_000883_030 Hb_000883_030 Hb_001135_280--Hb_000883_030 Hb_006111_070 Hb_006111_070 Hb_001135_280--Hb_006111_070 Hb_006452_090 Hb_006452_090 Hb_001135_280--Hb_006452_090 Hb_003688_170--Hb_011063_020 Hb_003688_170--Hb_003688_160 Hb_003688_170--Hb_000251_090 Hb_000160_030 Hb_000160_030 Hb_003688_170--Hb_000160_030 Hb_024404_010 Hb_024404_010 Hb_003688_170--Hb_024404_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.770064 0 0 0 2.08875 0.406033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.95539 1.04769 1.11815

CAGE analysis