Hb_000160_030

Information

Type -
Description -
Location Contig160: 25541-26923
Sequence    

Annotation

kegg
ID cit:102617784
description probable S-adenosylmethionine-dependent methyltransferase At5g37990-like
nr
ID XP_010108925.1
description putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
swissprot
ID Q9LS10
description Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1
trembl
ID W9SQ72
description Putative S-adenosylmethionine-dependent methyltransferase OS=Morus notabilis GN=L484_027120 PE=4 SV=1
Gene Ontology
ID GO:0005488
description probable s-adenosylmethionine-dependent methyltransferase at5g37990

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_030 0.0 - - putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
2 Hb_011063_020 0.2007788297 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
3 Hb_003688_170 0.2277478066 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
4 Hb_000590_030 0.2314768824 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011639_060 0.259744755 - - Oligopeptide transporter, putative [Ricinus communis]
6 Hb_000392_390 0.2859076058 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_002139_010 0.2915667563 - - -
8 Hb_006061_010 0.3093470995 - - PREDICTED: phytosulfokines 4-like [Populus euphratica]
9 Hb_002450_110 0.3101505463 - - PREDICTED: geraniol 8-hydroxylase-like [Beta vulgaris subsp. vulgaris]
10 Hb_027028_030 0.3120656503 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005714_110 0.3138338693 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10 [Jatropha curcas]
12 Hb_153365_010 0.3139422039 - - PREDICTED: uncharacterized protein LOC104236681 [Nicotiana sylvestris]
13 Hb_005211_160 0.3140567214 - - Protein PNS1, putative [Ricinus communis]
14 Hb_043674_060 0.3152223595 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
15 Hb_003540_130 0.3170801422 - - -
16 Hb_000733_130 0.3200622909 - - PREDICTED: cucumisin [Vitis vinifera]
17 Hb_024404_010 0.325332291 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
18 Hb_104812_030 0.3264970133 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
19 Hb_000116_300 0.3345546936 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000041_150 0.3350866169 - - Stachyose synthase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000160_030 Hb_000160_030 Hb_011063_020 Hb_011063_020 Hb_000160_030--Hb_011063_020 Hb_003688_170 Hb_003688_170 Hb_000160_030--Hb_003688_170 Hb_000590_030 Hb_000590_030 Hb_000160_030--Hb_000590_030 Hb_011639_060 Hb_011639_060 Hb_000160_030--Hb_011639_060 Hb_000392_390 Hb_000392_390 Hb_000160_030--Hb_000392_390 Hb_002139_010 Hb_002139_010 Hb_000160_030--Hb_002139_010 Hb_011063_020--Hb_003688_170 Hb_011063_020--Hb_000590_030 Hb_024404_010 Hb_024404_010 Hb_011063_020--Hb_024404_010 Hb_000251_090 Hb_000251_090 Hb_011063_020--Hb_000251_090 Hb_011063_020--Hb_002139_010 Hb_003688_160 Hb_003688_160 Hb_003688_170--Hb_003688_160 Hb_003688_170--Hb_000251_090 Hb_001242_090 Hb_001242_090 Hb_003688_170--Hb_001242_090 Hb_003688_170--Hb_024404_010 Hb_000099_220 Hb_000099_220 Hb_000590_030--Hb_000099_220 Hb_000590_030--Hb_024404_010 Hb_002450_110 Hb_002450_110 Hb_000590_030--Hb_002450_110 Hb_003768_040 Hb_003768_040 Hb_000590_030--Hb_003768_040 Hb_011639_060--Hb_002139_010 Hb_001369_380 Hb_001369_380 Hb_011639_060--Hb_001369_380 Hb_095471_010 Hb_095471_010 Hb_011639_060--Hb_095471_010 Hb_000943_030 Hb_000943_030 Hb_011639_060--Hb_000943_030 Hb_011639_060--Hb_002450_110 Hb_001903_080 Hb_001903_080 Hb_000392_390--Hb_001903_080 Hb_019654_080 Hb_019654_080 Hb_000392_390--Hb_019654_080 Hb_003752_050 Hb_003752_050 Hb_000392_390--Hb_003752_050 Hb_000392_390--Hb_002139_010 Hb_043674_060 Hb_043674_060 Hb_000392_390--Hb_043674_060 Hb_046440_010 Hb_046440_010 Hb_002139_010--Hb_046440_010 Hb_002139_010--Hb_003752_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0453 0.079453 0.0646 0.243366 0.484716 0.0364439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0473722 0 1.23875 0.0598596 0.0765122

CAGE analysis