Hb_000392_390

Information

Type transcription factor
Description TF Family: WRKY
Location Contig392: 321274-326289
Sequence    

Annotation

kegg
ID rcu:RCOM_1513950
description WRKY transcription factor, putative
nr
ID XP_002511536.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9LXG8
description Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1
trembl
ID B9R961
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1513950 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 72 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_390 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_001903_080 0.2496979716 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
3 Hb_019654_080 0.2670766883 - - -
4 Hb_003752_050 0.2762442068 - - hypothetical protein JCGZ_15078 [Jatropha curcas]
5 Hb_002139_010 0.2842145531 - - -
6 Hb_043674_060 0.2842996425 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
7 Hb_000160_030 0.2859076058 - - putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
8 Hb_011639_070 0.2939496212 - - PREDICTED: uncharacterized protein LOC105636024 isoform X2 [Jatropha curcas]
9 Hb_006120_100 0.2988917229 - - -
10 Hb_011639_060 0.3048880182 - - Oligopeptide transporter, putative [Ricinus communis]
11 Hb_129067_010 0.3072761025 - - Cytochrome P450 superfamily protein [Theobroma cacao]
12 Hb_138652_010 0.3095745583 - - hypothetical protein JCGZ_13474 [Jatropha curcas]
13 Hb_005714_110 0.31057893 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10 [Jatropha curcas]
14 Hb_012363_010 0.3156292555 - - -
15 Hb_153365_010 0.320627814 - - PREDICTED: uncharacterized protein LOC104236681 [Nicotiana sylvestris]
16 Hb_143397_010 0.3267248806 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
17 Hb_011063_020 0.3309235295 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
18 Hb_104812_030 0.3330890338 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
19 Hb_001902_020 0.3347026392 - - -
20 Hb_130788_010 0.3458757813 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_390 Hb_000392_390 Hb_001903_080 Hb_001903_080 Hb_000392_390--Hb_001903_080 Hb_019654_080 Hb_019654_080 Hb_000392_390--Hb_019654_080 Hb_003752_050 Hb_003752_050 Hb_000392_390--Hb_003752_050 Hb_002139_010 Hb_002139_010 Hb_000392_390--Hb_002139_010 Hb_043674_060 Hb_043674_060 Hb_000392_390--Hb_043674_060 Hb_000160_030 Hb_000160_030 Hb_000392_390--Hb_000160_030 Hb_001902_020 Hb_001902_020 Hb_001903_080--Hb_001902_020 Hb_011639_070 Hb_011639_070 Hb_001903_080--Hb_011639_070 Hb_011909_090 Hb_011909_090 Hb_001903_080--Hb_011909_090 Hb_002498_200 Hb_002498_200 Hb_001903_080--Hb_002498_200 Hb_095413_040 Hb_095413_040 Hb_001903_080--Hb_095413_040 Hb_019654_080--Hb_003752_050 Hb_006061_010 Hb_006061_010 Hb_019654_080--Hb_006061_010 Hb_130788_010 Hb_130788_010 Hb_019654_080--Hb_130788_010 Hb_003540_130 Hb_003540_130 Hb_019654_080--Hb_003540_130 Hb_001993_020 Hb_001993_020 Hb_019654_080--Hb_001993_020 Hb_012363_010 Hb_012363_010 Hb_003752_050--Hb_012363_010 Hb_003752_050--Hb_130788_010 Hb_046440_010 Hb_046440_010 Hb_003752_050--Hb_046440_010 Hb_001195_390 Hb_001195_390 Hb_003752_050--Hb_001195_390 Hb_011639_060 Hb_011639_060 Hb_002139_010--Hb_011639_060 Hb_011063_020 Hb_011063_020 Hb_002139_010--Hb_011063_020 Hb_002139_010--Hb_000160_030 Hb_002139_010--Hb_046440_010 Hb_002139_010--Hb_003752_050 Hb_005714_110 Hb_005714_110 Hb_043674_060--Hb_005714_110 Hb_153365_010 Hb_153365_010 Hb_043674_060--Hb_153365_010 Hb_124518_010 Hb_124518_010 Hb_043674_060--Hb_124518_010 Hb_005357_090 Hb_005357_090 Hb_043674_060--Hb_005357_090 Hb_001930_020 Hb_001930_020 Hb_043674_060--Hb_001930_020 Hb_000735_150 Hb_000735_150 Hb_043674_060--Hb_000735_150 Hb_000160_030--Hb_011063_020 Hb_003688_170 Hb_003688_170 Hb_000160_030--Hb_003688_170 Hb_000590_030 Hb_000590_030 Hb_000160_030--Hb_000590_030 Hb_000160_030--Hb_011639_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.63646 0.60086 0.0823563 0.0230548 1.25762 0.428438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.96341 0.369638 0.0755041

CAGE analysis