Hb_005357_090

Information

Type -
Description -
Location Contig5357: 70749-71561
Sequence    

Annotation

kegg
ID rcu:RCOM_0905760
description ubiquitin, putative
nr
ID XP_002518535.1
description ubiquitin, putative [Ricinus communis]
swissprot
ID P59669
description Polyubiquitin OS=Geodia cydonium PE=2 SV=2
trembl
ID B9RXR6
description Ubiquitin, putative OS=Ricinus communis GN=RCOM_0905760 PE=4 SV=1
Gene Ontology
ID GO:0005737
description ubiquitin-like protein-nedd8-like protein rub3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_090 0.0 - - ubiquitin, putative [Ricinus communis]
2 Hb_001930_020 0.0045378581 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
3 Hb_124518_010 0.0280714317 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
4 Hb_002357_050 0.0375862821 - - -
5 Hb_000735_150 0.0674913474 - - hypothetical protein JCGZ_15322 [Jatropha curcas]
6 Hb_005078_030 0.0733695312 - - -
7 Hb_004757_030 0.0748374077 - - -
8 Hb_001318_090 0.1524361058 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
9 Hb_012725_080 0.1538468063 - - -
10 Hb_005396_160 0.1799029891 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
11 Hb_052983_010 0.2353722766 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_001190_090 0.252145354 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
13 Hb_043674_060 0.2600396551 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
14 Hb_042211_010 0.265949298 - - PREDICTED: uncharacterized protein LOC103404019 [Malus domestica]
15 Hb_006120_100 0.2709895115 - - -
16 Hb_004108_030 0.2722424854 - - -
17 Hb_005714_110 0.2773685332 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10 [Jatropha curcas]
18 Hb_000042_190 0.2787799399 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007513_010 0.2797974075 - - -
20 Hb_004321_010 0.2819027751 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_005357_090 Hb_005357_090 Hb_001930_020 Hb_001930_020 Hb_005357_090--Hb_001930_020 Hb_124518_010 Hb_124518_010 Hb_005357_090--Hb_124518_010 Hb_002357_050 Hb_002357_050 Hb_005357_090--Hb_002357_050 Hb_000735_150 Hb_000735_150 Hb_005357_090--Hb_000735_150 Hb_005078_030 Hb_005078_030 Hb_005357_090--Hb_005078_030 Hb_004757_030 Hb_004757_030 Hb_005357_090--Hb_004757_030 Hb_001930_020--Hb_124518_010 Hb_001930_020--Hb_002357_050 Hb_001930_020--Hb_005078_030 Hb_001930_020--Hb_004757_030 Hb_001930_020--Hb_000735_150 Hb_124518_010--Hb_000735_150 Hb_124518_010--Hb_002357_050 Hb_124518_010--Hb_005078_030 Hb_124518_010--Hb_004757_030 Hb_002357_050--Hb_005078_030 Hb_002357_050--Hb_004757_030 Hb_002357_050--Hb_000735_150 Hb_000735_150--Hb_005078_030 Hb_000735_150--Hb_004757_030 Hb_005078_030--Hb_004757_030 Hb_001318_090 Hb_001318_090 Hb_005078_030--Hb_001318_090 Hb_012725_080 Hb_012725_080 Hb_005078_030--Hb_012725_080 Hb_004757_030--Hb_001318_090 Hb_004757_030--Hb_012725_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0721523 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0941013 0 0

CAGE analysis