Hb_124518_010

Information

Type -
Description -
Location Contig124518: 131-2006
Sequence    

Annotation

kegg
ID tcc:TCM_043384
description DNA/RNA polymerases superfamily protein
nr
ID XP_012437464.1
description PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061FNI4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_043384 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124518_010 0.0 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
2 Hb_005357_090 0.0280714317 - - ubiquitin, putative [Ricinus communis]
3 Hb_001930_020 0.0326078125 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
4 Hb_000735_150 0.0394459889 - - hypothetical protein JCGZ_15322 [Jatropha curcas]
5 Hb_002357_050 0.0656327612 - - -
6 Hb_005078_030 0.1013644411 - - -
7 Hb_004757_030 0.1028295979 - - -
8 Hb_001318_090 0.1802109093 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
9 Hb_012725_080 0.1816162315 - - -
10 Hb_005396_160 0.2075630427 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
11 Hb_052983_010 0.2555533841 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_006120_100 0.2569937381 - - -
13 Hb_043674_060 0.2585228814 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
14 Hb_001190_090 0.2619999567 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
15 Hb_004108_030 0.277100399 - - -
16 Hb_005714_110 0.2801712577 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10 [Jatropha curcas]
17 Hb_000042_190 0.2818161257 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007513_010 0.2841185982 - - -
19 Hb_004321_010 0.2882662148 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_042211_010 0.2930965562 - - PREDICTED: uncharacterized protein LOC103404019 [Malus domestica]

Gene co-expression network

sample Hb_124518_010 Hb_124518_010 Hb_005357_090 Hb_005357_090 Hb_124518_010--Hb_005357_090 Hb_001930_020 Hb_001930_020 Hb_124518_010--Hb_001930_020 Hb_000735_150 Hb_000735_150 Hb_124518_010--Hb_000735_150 Hb_002357_050 Hb_002357_050 Hb_124518_010--Hb_002357_050 Hb_005078_030 Hb_005078_030 Hb_124518_010--Hb_005078_030 Hb_004757_030 Hb_004757_030 Hb_124518_010--Hb_004757_030 Hb_005357_090--Hb_001930_020 Hb_005357_090--Hb_002357_050 Hb_005357_090--Hb_000735_150 Hb_005357_090--Hb_005078_030 Hb_005357_090--Hb_004757_030 Hb_001930_020--Hb_002357_050 Hb_001930_020--Hb_005078_030 Hb_001930_020--Hb_004757_030 Hb_001930_020--Hb_000735_150 Hb_000735_150--Hb_002357_050 Hb_000735_150--Hb_005078_030 Hb_000735_150--Hb_004757_030 Hb_002357_050--Hb_005078_030 Hb_002357_050--Hb_004757_030 Hb_005078_030--Hb_004757_030 Hb_001318_090 Hb_001318_090 Hb_005078_030--Hb_001318_090 Hb_012725_080 Hb_012725_080 Hb_005078_030--Hb_012725_080 Hb_004757_030--Hb_001318_090 Hb_004757_030--Hb_012725_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.292296 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.333773 0 0

CAGE analysis