Hb_001318_090

Information

Type -
Description -
Location Contig1318: 83716-85102
Sequence    

Annotation

kegg
ID rcu:RCOM_1344110
description hypothetical protein
nr
ID XP_012082972.1
description PREDICTED: zinc finger protein 598 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K930
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14090 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger protein 598-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09206: 85854-86005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_090 0.0 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
2 Hb_012725_080 0.0014258504 - - -
3 Hb_005396_160 0.0278228315 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
4 Hb_004757_030 0.0779707154 - - -
5 Hb_005078_030 0.0794376522 - - -
6 Hb_002357_050 0.1151167142 - - -
7 Hb_042211_010 0.1159524188 - - PREDICTED: uncharacterized protein LOC103404019 [Malus domestica]
8 Hb_001930_020 0.1479385651 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
9 Hb_005357_090 0.1524361058 - - ubiquitin, putative [Ricinus communis]
10 Hb_052983_010 0.1659964123 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_124518_010 0.1802109093 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
12 Hb_000735_150 0.219082389 - - hypothetical protein JCGZ_15322 [Jatropha curcas]
13 Hb_001190_090 0.2488079329 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
14 Hb_001235_080 0.2805431595 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004321_010 0.2918142853 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_004108_030 0.2918221396 - - -
17 Hb_007513_010 0.3007809166 - - -
18 Hb_005714_110 0.3064104314 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10 [Jatropha curcas]
19 Hb_000042_190 0.3064240049 - - conserved hypothetical protein [Ricinus communis]
20 Hb_043674_060 0.3122751181 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001318_090 Hb_001318_090 Hb_012725_080 Hb_012725_080 Hb_001318_090--Hb_012725_080 Hb_005396_160 Hb_005396_160 Hb_001318_090--Hb_005396_160 Hb_004757_030 Hb_004757_030 Hb_001318_090--Hb_004757_030 Hb_005078_030 Hb_005078_030 Hb_001318_090--Hb_005078_030 Hb_002357_050 Hb_002357_050 Hb_001318_090--Hb_002357_050 Hb_042211_010 Hb_042211_010 Hb_001318_090--Hb_042211_010 Hb_012725_080--Hb_005396_160 Hb_012725_080--Hb_004757_030 Hb_012725_080--Hb_005078_030 Hb_012725_080--Hb_042211_010 Hb_012725_080--Hb_002357_050 Hb_005396_160--Hb_042211_010 Hb_005396_160--Hb_004757_030 Hb_005396_160--Hb_005078_030 Hb_005396_160--Hb_002357_050 Hb_004757_030--Hb_005078_030 Hb_004757_030--Hb_002357_050 Hb_001930_020 Hb_001930_020 Hb_004757_030--Hb_001930_020 Hb_005357_090 Hb_005357_090 Hb_004757_030--Hb_005357_090 Hb_005078_030--Hb_002357_050 Hb_005078_030--Hb_001930_020 Hb_005078_030--Hb_005357_090 Hb_002357_050--Hb_001930_020 Hb_002357_050--Hb_005357_090 Hb_124518_010 Hb_124518_010 Hb_002357_050--Hb_124518_010 Hb_000735_150 Hb_000735_150 Hb_002357_050--Hb_000735_150 Hb_052983_010 Hb_052983_010 Hb_042211_010--Hb_052983_010 Hb_042211_010--Hb_004757_030 Hb_042211_010--Hb_005078_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.124826 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.34878 0 0

CAGE analysis