Hb_052983_010

Information

Type -
Description -
Location Contig52983: 252-1301
Sequence    

Annotation

kegg
ID cmo:103496653
description uncharacterized LOC103496653
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052983_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_005396_160 0.1653201284 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
3 Hb_012725_080 0.1658515502 - - -
4 Hb_001318_090 0.1659964123 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
5 Hb_004757_030 0.1902225735 - - -
6 Hb_005078_030 0.1909443839 - - -
7 Hb_042211_010 0.1913113745 - - PREDICTED: uncharacterized protein LOC103404019 [Malus domestica]
8 Hb_002357_050 0.2107884761 - - -
9 Hb_001930_020 0.2322408862 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
10 Hb_005357_090 0.2353722766 - - ubiquitin, putative [Ricinus communis]
11 Hb_005714_110 0.2516008311 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10 [Jatropha curcas]
12 Hb_153365_010 0.2553172354 - - PREDICTED: uncharacterized protein LOC104236681 [Nicotiana sylvestris]
13 Hb_124518_010 0.2555533841 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
14 Hb_043674_060 0.2665238661 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
15 Hb_000042_190 0.2731501888 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000735_150 0.2857836051 - - hypothetical protein JCGZ_15322 [Jatropha curcas]
17 Hb_001190_090 0.299070289 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
18 Hb_001235_080 0.3145462435 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007177_010 0.3156759798 - - -
20 Hb_006355_050 0.3157277135 - - -

Gene co-expression network

sample Hb_052983_010 Hb_052983_010 Hb_005396_160 Hb_005396_160 Hb_052983_010--Hb_005396_160 Hb_012725_080 Hb_012725_080 Hb_052983_010--Hb_012725_080 Hb_001318_090 Hb_001318_090 Hb_052983_010--Hb_001318_090 Hb_004757_030 Hb_004757_030 Hb_052983_010--Hb_004757_030 Hb_005078_030 Hb_005078_030 Hb_052983_010--Hb_005078_030 Hb_042211_010 Hb_042211_010 Hb_052983_010--Hb_042211_010 Hb_005396_160--Hb_012725_080 Hb_005396_160--Hb_001318_090 Hb_005396_160--Hb_042211_010 Hb_005396_160--Hb_004757_030 Hb_005396_160--Hb_005078_030 Hb_002357_050 Hb_002357_050 Hb_005396_160--Hb_002357_050 Hb_012725_080--Hb_001318_090 Hb_012725_080--Hb_004757_030 Hb_012725_080--Hb_005078_030 Hb_012725_080--Hb_042211_010 Hb_012725_080--Hb_002357_050 Hb_001318_090--Hb_004757_030 Hb_001318_090--Hb_005078_030 Hb_001318_090--Hb_002357_050 Hb_001318_090--Hb_042211_010 Hb_004757_030--Hb_005078_030 Hb_004757_030--Hb_002357_050 Hb_001930_020 Hb_001930_020 Hb_004757_030--Hb_001930_020 Hb_005357_090 Hb_005357_090 Hb_004757_030--Hb_005357_090 Hb_005078_030--Hb_002357_050 Hb_005078_030--Hb_001930_020 Hb_005078_030--Hb_005357_090 Hb_042211_010--Hb_004757_030 Hb_042211_010--Hb_005078_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178695 0 0 0 0.0238736 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.550515 0.0172777 0

CAGE analysis