Hb_005078_030

Information

Type -
Description -
Location Contig5078: 27009-30870
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005078_030 0.0 - - -
2 Hb_004757_030 0.0014710375 - - -
3 Hb_002357_050 0.0358208949 - - -
4 Hb_001930_020 0.0688402273 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
5 Hb_005357_090 0.0733695312 - - ubiquitin, putative [Ricinus communis]
6 Hb_001318_090 0.0794376522 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
7 Hb_012725_080 0.0808589852 - - -
8 Hb_124518_010 0.1013644411 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
9 Hb_005396_160 0.1071397659 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
10 Hb_000735_150 0.1406103382 - - hypothetical protein JCGZ_15322 [Jatropha curcas]
11 Hb_052983_010 0.1909443839 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_042211_010 0.194362481 - - PREDICTED: uncharacterized protein LOC103404019 [Malus domestica]
13 Hb_001190_090 0.2393424492 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
14 Hb_004108_030 0.2720708588 - - -
15 Hb_043674_060 0.2767797749 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
16 Hb_004321_010 0.2771666193 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_007513_010 0.280655545 - - -
18 Hb_005714_110 0.2823324264 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10 [Jatropha curcas]
19 Hb_000042_190 0.2830649982 - - conserved hypothetical protein [Ricinus communis]
20 Hb_153365_010 0.2933355299 - - PREDICTED: uncharacterized protein LOC104236681 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_005078_030 Hb_005078_030 Hb_004757_030 Hb_004757_030 Hb_005078_030--Hb_004757_030 Hb_002357_050 Hb_002357_050 Hb_005078_030--Hb_002357_050 Hb_001930_020 Hb_001930_020 Hb_005078_030--Hb_001930_020 Hb_005357_090 Hb_005357_090 Hb_005078_030--Hb_005357_090 Hb_001318_090 Hb_001318_090 Hb_005078_030--Hb_001318_090 Hb_012725_080 Hb_012725_080 Hb_005078_030--Hb_012725_080 Hb_004757_030--Hb_002357_050 Hb_004757_030--Hb_001930_020 Hb_004757_030--Hb_005357_090 Hb_004757_030--Hb_001318_090 Hb_004757_030--Hb_012725_080 Hb_002357_050--Hb_001930_020 Hb_002357_050--Hb_005357_090 Hb_124518_010 Hb_124518_010 Hb_002357_050--Hb_124518_010 Hb_000735_150 Hb_000735_150 Hb_002357_050--Hb_000735_150 Hb_001930_020--Hb_005357_090 Hb_001930_020--Hb_124518_010 Hb_001930_020--Hb_000735_150 Hb_005357_090--Hb_124518_010 Hb_005357_090--Hb_000735_150 Hb_001318_090--Hb_012725_080 Hb_005396_160 Hb_005396_160 Hb_001318_090--Hb_005396_160 Hb_001318_090--Hb_002357_050 Hb_042211_010 Hb_042211_010 Hb_001318_090--Hb_042211_010 Hb_012725_080--Hb_005396_160 Hb_012725_080--Hb_042211_010 Hb_012725_080--Hb_002357_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.245292 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.456121 0 0

CAGE analysis