Hb_005396_160

Information

Type -
Description -
Location Contig5396: 164565-165591
Sequence    

Annotation

kegg
ID rcu:RCOM_0704530
description hypothetical protein
nr
ID XP_012082013.1
description PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
swissprot
ID Q9LIG0
description Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1
trembl
ID A0A067KBZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18270 PE=4 SV=1
Gene Ontology
ID GO:0016491
description clavaminate synthase-like protein at3g21360

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_160 0.0 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
2 Hb_012725_080 0.0263975771 - - -
3 Hb_001318_090 0.0278228315 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
4 Hb_042211_010 0.0883227817 - - PREDICTED: uncharacterized protein LOC103404019 [Malus domestica]
5 Hb_004757_030 0.1056764558 - - -
6 Hb_005078_030 0.1071397659 - - -
7 Hb_002357_050 0.142716698 - - -
8 Hb_052983_010 0.1653201284 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_001930_020 0.1754228098 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
10 Hb_005357_090 0.1799029891 - - ubiquitin, putative [Ricinus communis]
11 Hb_124518_010 0.2075630427 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
12 Hb_000735_150 0.2462533715 - - hypothetical protein JCGZ_15322 [Jatropha curcas]
13 Hb_001190_090 0.2575400014 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
14 Hb_001235_080 0.2688072585 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004321_010 0.3013443625 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_004108_030 0.3029708782 - - -
17 Hb_007513_010 0.3119009486 - - -
18 Hb_000042_190 0.3184647749 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000083_040 0.3186664468 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005714_110 0.3186735183 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10 [Jatropha curcas]

Gene co-expression network

sample Hb_005396_160 Hb_005396_160 Hb_012725_080 Hb_012725_080 Hb_005396_160--Hb_012725_080 Hb_001318_090 Hb_001318_090 Hb_005396_160--Hb_001318_090 Hb_042211_010 Hb_042211_010 Hb_005396_160--Hb_042211_010 Hb_004757_030 Hb_004757_030 Hb_005396_160--Hb_004757_030 Hb_005078_030 Hb_005078_030 Hb_005396_160--Hb_005078_030 Hb_002357_050 Hb_002357_050 Hb_005396_160--Hb_002357_050 Hb_012725_080--Hb_001318_090 Hb_012725_080--Hb_004757_030 Hb_012725_080--Hb_005078_030 Hb_012725_080--Hb_042211_010 Hb_012725_080--Hb_002357_050 Hb_001318_090--Hb_004757_030 Hb_001318_090--Hb_005078_030 Hb_001318_090--Hb_002357_050 Hb_001318_090--Hb_042211_010 Hb_052983_010 Hb_052983_010 Hb_042211_010--Hb_052983_010 Hb_042211_010--Hb_004757_030 Hb_042211_010--Hb_005078_030 Hb_004757_030--Hb_005078_030 Hb_004757_030--Hb_002357_050 Hb_001930_020 Hb_001930_020 Hb_004757_030--Hb_001930_020 Hb_005357_090 Hb_005357_090 Hb_004757_030--Hb_005357_090 Hb_005078_030--Hb_002357_050 Hb_005078_030--Hb_001930_020 Hb_005078_030--Hb_005357_090 Hb_002357_050--Hb_001930_020 Hb_002357_050--Hb_005357_090 Hb_124518_010 Hb_124518_010 Hb_002357_050--Hb_124518_010 Hb_000735_150 Hb_000735_150 Hb_002357_050--Hb_000735_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0329819 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.107233 0 0

CAGE analysis