Hb_042211_010

Information

Type -
Description -
Location Contig42211: 196-5553
Sequence    

Annotation

kegg
ID bvg:104894399
description uncharacterized LOC104894399
nr
ID XP_008341098.1
description PREDICTED: uncharacterized protein LOC103404019 [Malus domestica]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A5B4Q4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004922 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042211_010 0.0 - - PREDICTED: uncharacterized protein LOC103404019 [Malus domestica]
2 Hb_005396_160 0.0883227817 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
3 Hb_012725_080 0.1145388679 - - -
4 Hb_001318_090 0.1159524188 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
5 Hb_052983_010 0.1913113745 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_004757_030 0.192919869 - - -
7 Hb_005078_030 0.194362481 - - -
8 Hb_002357_050 0.229398303 - - -
9 Hb_001235_080 0.2471693683 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000083_040 0.2595233177 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001930_020 0.2615490814 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
12 Hb_005357_090 0.265949298 - - ubiquitin, putative [Ricinus communis]
13 Hb_006355_050 0.2737151924 - - -
14 Hb_000038_190 0.2849367163 - - -
15 Hb_000046_150 0.2849367163 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000047_120 0.2849367163 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000062_120 0.2849367163 - - hypothetical protein JCGZ_17895 [Jatropha curcas]
18 Hb_000094_140 0.2849367163 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
19 Hb_000100_080 0.2849367163 - - -
20 Hb_000120_830 0.2849367163 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]

Gene co-expression network

sample Hb_042211_010 Hb_042211_010 Hb_005396_160 Hb_005396_160 Hb_042211_010--Hb_005396_160 Hb_012725_080 Hb_012725_080 Hb_042211_010--Hb_012725_080 Hb_001318_090 Hb_001318_090 Hb_042211_010--Hb_001318_090 Hb_052983_010 Hb_052983_010 Hb_042211_010--Hb_052983_010 Hb_004757_030 Hb_004757_030 Hb_042211_010--Hb_004757_030 Hb_005078_030 Hb_005078_030 Hb_042211_010--Hb_005078_030 Hb_005396_160--Hb_012725_080 Hb_005396_160--Hb_001318_090 Hb_005396_160--Hb_004757_030 Hb_005396_160--Hb_005078_030 Hb_002357_050 Hb_002357_050 Hb_005396_160--Hb_002357_050 Hb_012725_080--Hb_001318_090 Hb_012725_080--Hb_004757_030 Hb_012725_080--Hb_005078_030 Hb_012725_080--Hb_002357_050 Hb_001318_090--Hb_004757_030 Hb_001318_090--Hb_005078_030 Hb_001318_090--Hb_002357_050 Hb_052983_010--Hb_005396_160 Hb_052983_010--Hb_012725_080 Hb_052983_010--Hb_001318_090 Hb_052983_010--Hb_004757_030 Hb_052983_010--Hb_005078_030 Hb_004757_030--Hb_005078_030 Hb_004757_030--Hb_002357_050 Hb_001930_020 Hb_001930_020 Hb_004757_030--Hb_001930_020 Hb_005357_090 Hb_005357_090 Hb_004757_030--Hb_005357_090 Hb_005078_030--Hb_002357_050 Hb_005078_030--Hb_001930_020 Hb_005078_030--Hb_005357_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00710598 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0392777 0 0

CAGE analysis