Hb_003540_130

Information

Type -
Description -
Location Contig3540: 90087-91175
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_130 0.0 - - -
2 Hb_000590_040 0.2324418288 - - hypothetical protein MPER_09217 [Moniliophthora perniciosa FA553]
3 Hb_000483_420 0.2447748647 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
4 Hb_001004_040 0.2503605331 - - conserved hypothetical protein [Ricinus communis]
5 Hb_085863_020 0.2527982409 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
6 Hb_003747_130 0.2557512648 - - -
7 Hb_019654_080 0.2772392106 - - -
8 Hb_002739_110 0.2787460277 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
9 Hb_013818_060 0.2828684069 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
10 Hb_004460_010 0.2839193733 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
11 Hb_003752_050 0.2953749901 - - hypothetical protein JCGZ_15078 [Jatropha curcas]
12 Hb_000576_040 0.2959236162 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
13 Hb_004321_010 0.2976188059 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_004324_350 0.2979873884 - - PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]
15 Hb_005211_160 0.2997347079 - - Protein PNS1, putative [Ricinus communis]
16 Hb_127003_010 0.3024251013 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
17 Hb_000120_120 0.305199367 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
18 Hb_003688_170 0.3061201696 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
19 Hb_011063_020 0.306899024 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
20 Hb_170193_010 0.3069123842 - - JHL25H03.10 [Jatropha curcas]

Gene co-expression network

sample Hb_003540_130 Hb_003540_130 Hb_000590_040 Hb_000590_040 Hb_003540_130--Hb_000590_040 Hb_000483_420 Hb_000483_420 Hb_003540_130--Hb_000483_420 Hb_001004_040 Hb_001004_040 Hb_003540_130--Hb_001004_040 Hb_085863_020 Hb_085863_020 Hb_003540_130--Hb_085863_020 Hb_003747_130 Hb_003747_130 Hb_003540_130--Hb_003747_130 Hb_019654_080 Hb_019654_080 Hb_003540_130--Hb_019654_080 Hb_000331_150 Hb_000331_150 Hb_000590_040--Hb_000331_150 Hb_003069_020 Hb_003069_020 Hb_000590_040--Hb_003069_020 Hb_004324_350 Hb_004324_350 Hb_000590_040--Hb_004324_350 Hb_002028_100 Hb_002028_100 Hb_000590_040--Hb_002028_100 Hb_067188_010 Hb_067188_010 Hb_000590_040--Hb_067188_010 Hb_000576_040 Hb_000576_040 Hb_000483_420--Hb_000576_040 Hb_002739_110 Hb_002739_110 Hb_000483_420--Hb_002739_110 Hb_152439_020 Hb_152439_020 Hb_000483_420--Hb_152439_020 Hb_000193_250 Hb_000193_250 Hb_000483_420--Hb_000193_250 Hb_000483_420--Hb_004324_350 Hb_000249_130 Hb_000249_130 Hb_000483_420--Hb_000249_130 Hb_001004_040--Hb_002739_110 Hb_150651_050 Hb_150651_050 Hb_001004_040--Hb_150651_050 Hb_000380_180 Hb_000380_180 Hb_001004_040--Hb_000380_180 Hb_001004_040--Hb_085863_020 Hb_000025_480 Hb_000025_480 Hb_001004_040--Hb_000025_480 Hb_001004_040--Hb_000249_130 Hb_022148_010 Hb_022148_010 Hb_085863_020--Hb_022148_010 Hb_000139_380 Hb_000139_380 Hb_085863_020--Hb_000139_380 Hb_170193_010 Hb_170193_010 Hb_085863_020--Hb_170193_010 Hb_127003_010 Hb_127003_010 Hb_085863_020--Hb_127003_010 Hb_011287_090 Hb_011287_090 Hb_085863_020--Hb_011287_090 Hb_000866_150 Hb_000866_150 Hb_003747_130--Hb_000866_150 Hb_002843_160 Hb_002843_160 Hb_003747_130--Hb_002843_160 Hb_002243_040 Hb_002243_040 Hb_003747_130--Hb_002243_040 Hb_003747_130--Hb_000483_420 Hb_003073_130 Hb_003073_130 Hb_003747_130--Hb_003073_130 Hb_003752_050 Hb_003752_050 Hb_019654_080--Hb_003752_050 Hb_006061_010 Hb_006061_010 Hb_019654_080--Hb_006061_010 Hb_130788_010 Hb_130788_010 Hb_019654_080--Hb_130788_010 Hb_000392_390 Hb_000392_390 Hb_019654_080--Hb_000392_390 Hb_001993_020 Hb_001993_020 Hb_019654_080--Hb_001993_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69786 0.0231825 0.0712196 0.0183857 0.627374 0.804575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0529169 0.16647 3.51551 0.0502523 0.169846

CAGE analysis