Hb_004324_350

Information

Type -
Description -
Location Contig4324: 222707-225309
Sequence    

Annotation

kegg
ID cmo:103484146
description uncharacterized LOC103484146
nr
ID XP_008439322.1
description PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]
swissprot
ID -
description -
trembl
ID A9NS09
description Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1
Gene Ontology
ID GO:0009073
description PREDICTED: uncharacterized protein LOC103484146

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_350 0.0 - - PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]
2 Hb_000380_180 0.1748911087 - - kinase, putative [Ricinus communis]
3 Hb_001488_100 0.1966474046 - - -
4 Hb_001767_010 0.1979068053 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
5 Hb_002498_060 0.1981558107 - - ATP binding protein, putative [Ricinus communis]
6 Hb_002739_110 0.1987645358 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
7 Hb_000249_130 0.1992281469 - - hypothetical protein RCOM_0254640 [Ricinus communis]
8 Hb_000291_280 0.2015536896 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
9 Hb_011218_060 0.2036583668 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
10 Hb_000157_010 0.2055259885 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
11 Hb_001004_040 0.206292062 - - conserved hypothetical protein [Ricinus communis]
12 Hb_182424_010 0.2073180212 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
13 Hb_000193_250 0.2097722751 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
14 Hb_000427_030 0.2111567729 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000483_420 0.2115109687 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
16 Hb_003497_030 0.2122607588 - - ADP-ribosylation factor, putative [Ricinus communis]
17 Hb_046703_010 0.2165565665 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
18 Hb_011909_040 0.2174913472 - - hypothetical protein JCGZ_00750 [Jatropha curcas]
19 Hb_067188_010 0.2196213169 - - -
20 Hb_000494_100 0.2233005048 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]

Gene co-expression network

sample Hb_004324_350 Hb_004324_350 Hb_000380_180 Hb_000380_180 Hb_004324_350--Hb_000380_180 Hb_001488_100 Hb_001488_100 Hb_004324_350--Hb_001488_100 Hb_001767_010 Hb_001767_010 Hb_004324_350--Hb_001767_010 Hb_002498_060 Hb_002498_060 Hb_004324_350--Hb_002498_060 Hb_002739_110 Hb_002739_110 Hb_004324_350--Hb_002739_110 Hb_000249_130 Hb_000249_130 Hb_004324_350--Hb_000249_130 Hb_003497_030 Hb_003497_030 Hb_000380_180--Hb_003497_030 Hb_000380_180--Hb_001767_010 Hb_000427_030 Hb_000427_030 Hb_000380_180--Hb_000427_030 Hb_000260_060 Hb_000260_060 Hb_000380_180--Hb_000260_060 Hb_000380_180--Hb_002739_110 Hb_000380_180--Hb_000249_130 Hb_002301_320 Hb_002301_320 Hb_001488_100--Hb_002301_320 Hb_001488_100--Hb_003497_030 Hb_002835_170 Hb_002835_170 Hb_001488_100--Hb_002835_170 Hb_011457_170 Hb_011457_170 Hb_001488_100--Hb_011457_170 Hb_001606_070 Hb_001606_070 Hb_001488_100--Hb_001606_070 Hb_000340_430 Hb_000340_430 Hb_001488_100--Hb_000340_430 Hb_114684_020 Hb_114684_020 Hb_001767_010--Hb_114684_020 Hb_001767_010--Hb_000427_030 Hb_011174_070 Hb_011174_070 Hb_001767_010--Hb_011174_070 Hb_003001_030 Hb_003001_030 Hb_001767_010--Hb_003001_030 Hb_000249_110 Hb_000249_110 Hb_001767_010--Hb_000249_110 Hb_004306_060 Hb_004306_060 Hb_002498_060--Hb_004306_060 Hb_152439_020 Hb_152439_020 Hb_002498_060--Hb_152439_020 Hb_000157_010 Hb_000157_010 Hb_002498_060--Hb_000157_010 Hb_004128_180 Hb_004128_180 Hb_002498_060--Hb_004128_180 Hb_000236_140 Hb_000236_140 Hb_002498_060--Hb_000236_140 Hb_001856_020 Hb_001856_020 Hb_002498_060--Hb_001856_020 Hb_001396_230 Hb_001396_230 Hb_002739_110--Hb_001396_230 Hb_001004_040 Hb_001004_040 Hb_002739_110--Hb_001004_040 Hb_002739_110--Hb_152439_020 Hb_002739_110--Hb_000249_130 Hb_008085_040 Hb_008085_040 Hb_002739_110--Hb_008085_040 Hb_143629_090 Hb_143629_090 Hb_000249_130--Hb_143629_090 Hb_003030_080 Hb_003030_080 Hb_000249_130--Hb_003030_080 Hb_000249_130--Hb_003497_030 Hb_024952_010 Hb_024952_010 Hb_000249_130--Hb_024952_010 Hb_000249_130--Hb_001606_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60813 0 0.202283 0.259898 2.9225 2.02056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.594975 1.71357 6.23784 0.467013 0

CAGE analysis