Hb_001488_100

Information

Type -
Description -
Location Contig1488: 74911-75676
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_100 0.0 - - -
2 Hb_002301_320 0.0873492971 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
3 Hb_003497_030 0.1147163461 - - ADP-ribosylation factor, putative [Ricinus communis]
4 Hb_002835_170 0.1205995932 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
5 Hb_011457_170 0.1214744717 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
6 Hb_001606_070 0.1247408468 - - fimbrin, putative [Ricinus communis]
7 Hb_000340_430 0.1269366309 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_005000_290 0.1295353427 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
9 Hb_001191_100 0.133676889 - - F-actin capping protein beta subunit [Populus trichocarpa]
10 Hb_001767_010 0.1349665674 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
11 Hb_003001_030 0.1359349497 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
12 Hb_000427_110 0.1366788071 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
13 Hb_000329_600 0.1375581216 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
14 Hb_000427_030 0.1377761235 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001999_060 0.1424083718 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
16 Hb_011457_100 0.1427781596 - - ATP binding protein, putative [Ricinus communis]
17 Hb_002200_110 0.143124239 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011909_040 0.1435367686 - - hypothetical protein JCGZ_00750 [Jatropha curcas]
19 Hb_103873_010 0.145888675 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
20 Hb_007760_030 0.1478186684 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]

Gene co-expression network

sample Hb_001488_100 Hb_001488_100 Hb_002301_320 Hb_002301_320 Hb_001488_100--Hb_002301_320 Hb_003497_030 Hb_003497_030 Hb_001488_100--Hb_003497_030 Hb_002835_170 Hb_002835_170 Hb_001488_100--Hb_002835_170 Hb_011457_170 Hb_011457_170 Hb_001488_100--Hb_011457_170 Hb_001606_070 Hb_001606_070 Hb_001488_100--Hb_001606_070 Hb_000340_430 Hb_000340_430 Hb_001488_100--Hb_000340_430 Hb_002301_320--Hb_002835_170 Hb_000571_070 Hb_000571_070 Hb_002301_320--Hb_000571_070 Hb_103873_010 Hb_103873_010 Hb_002301_320--Hb_103873_010 Hb_002248_050 Hb_002248_050 Hb_002301_320--Hb_002248_050 Hb_003001_030 Hb_003001_030 Hb_002301_320--Hb_003001_030 Hb_000380_180 Hb_000380_180 Hb_003497_030--Hb_000380_180 Hb_003497_030--Hb_001606_070 Hb_002357_040 Hb_002357_040 Hb_003497_030--Hb_002357_040 Hb_027751_020 Hb_027751_020 Hb_003497_030--Hb_027751_020 Hb_000260_060 Hb_000260_060 Hb_003497_030--Hb_000260_060 Hb_003497_030--Hb_002835_170 Hb_011457_100 Hb_011457_100 Hb_002835_170--Hb_011457_100 Hb_001478_050 Hb_001478_050 Hb_002835_170--Hb_001478_050 Hb_001102_010 Hb_001102_010 Hb_002835_170--Hb_001102_010 Hb_116349_150 Hb_116349_150 Hb_002835_170--Hb_116349_150 Hb_002835_170--Hb_001606_070 Hb_010417_020 Hb_010417_020 Hb_011457_170--Hb_010417_020 Hb_001946_320 Hb_001946_320 Hb_011457_170--Hb_001946_320 Hb_004453_140 Hb_004453_140 Hb_011457_170--Hb_004453_140 Hb_005000_290 Hb_005000_290 Hb_011457_170--Hb_005000_290 Hb_000157_010 Hb_000157_010 Hb_011457_170--Hb_000157_010 Hb_000849_040 Hb_000849_040 Hb_001606_070--Hb_000849_040 Hb_005779_100 Hb_005779_100 Hb_001606_070--Hb_005779_100 Hb_003030_080 Hb_003030_080 Hb_001606_070--Hb_003030_080 Hb_000427_110 Hb_000427_110 Hb_001606_070--Hb_000427_110 Hb_006787_040 Hb_006787_040 Hb_001606_070--Hb_006787_040 Hb_000861_040 Hb_000861_040 Hb_001606_070--Hb_000861_040 Hb_102864_010 Hb_102864_010 Hb_000340_430--Hb_102864_010 Hb_000599_090 Hb_000599_090 Hb_000340_430--Hb_000599_090 Hb_001191_100 Hb_001191_100 Hb_000340_430--Hb_001191_100 Hb_002307_090 Hb_002307_090 Hb_000340_430--Hb_002307_090 Hb_000111_280 Hb_000111_280 Hb_000340_430--Hb_000111_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.07526 0.140144 0.112392 0.169217 2.5613 2.49094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66443 2.87854 3.9597 0.319708 0

CAGE analysis