Hb_006787_040

Information

Type -
Description -
Location Contig6787: 37652-43694
Sequence    

Annotation

kegg
ID rcu:RCOM_0812530
description polyadenylate-binding protein, putative
nr
ID XP_002518733.1
description polyadenylate-binding protein, putative [Ricinus communis]
swissprot
ID Q9FXA2
description Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1
trembl
ID B9RYE9
description Polyadenylate-binding protein OS=Ricinus communis GN=RCOM_0812530 PE=3 SV=1
Gene Ontology
ID GO:0005737
description polyadenylate-binding protein 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53629: 37704-43603 , PASA_asmbl_53630: 39423-39526
cDNA
(Sanger)
(ID:Location)		 031_B24.ab1: 42190-43216 , 040_N01.ab1: 42181-43485 , 050_G24.ab1: 43452-43603

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006787_040 0.0 - - polyadenylate-binding protein, putative [Ricinus communis]
2 Hb_000849_040 0.0632177967 - - transcription factor, putative [Ricinus communis]
3 Hb_000442_030 0.0829129052 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000193_230 0.083716671 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
5 Hb_000387_080 0.088223849 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
6 Hb_001366_220 0.0907226547 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001191_100 0.0927077594 - - F-actin capping protein beta subunit [Populus trichocarpa]
8 Hb_008408_030 0.0929518483 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
9 Hb_005245_090 0.0967821982 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
10 Hb_001606_070 0.0986440645 - - fimbrin, putative [Ricinus communis]
11 Hb_002025_320 0.0990875444 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
12 Hb_134789_010 0.1015070913 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
13 Hb_116349_150 0.1026816278 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
14 Hb_000787_070 0.1032894383 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
15 Hb_000304_020 0.105228026 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
16 Hb_009026_050 0.1077594178 - - vacuolar ATPase F subunit [Hevea brasiliensis]
17 Hb_025087_010 0.1079909397 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
18 Hb_000313_380 0.1081469899 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001366_230 0.1083151896 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000427_110 0.1084272156 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006787_040 Hb_006787_040 Hb_000849_040 Hb_000849_040 Hb_006787_040--Hb_000849_040 Hb_000442_030 Hb_000442_030 Hb_006787_040--Hb_000442_030 Hb_000193_230 Hb_000193_230 Hb_006787_040--Hb_000193_230 Hb_000387_080 Hb_000387_080 Hb_006787_040--Hb_000387_080 Hb_001366_220 Hb_001366_220 Hb_006787_040--Hb_001366_220 Hb_001191_100 Hb_001191_100 Hb_006787_040--Hb_001191_100 Hb_000849_040--Hb_000442_030 Hb_000304_020 Hb_000304_020 Hb_000849_040--Hb_000304_020 Hb_024505_040 Hb_024505_040 Hb_000849_040--Hb_024505_040 Hb_001606_070 Hb_001606_070 Hb_000849_040--Hb_001606_070 Hb_000849_040--Hb_000387_080 Hb_000442_030--Hb_024505_040 Hb_000442_030--Hb_000387_080 Hb_000563_540 Hb_000563_540 Hb_000442_030--Hb_000563_540 Hb_001017_090 Hb_001017_090 Hb_000442_030--Hb_001017_090 Hb_000078_030 Hb_000078_030 Hb_000193_230--Hb_000078_030 Hb_002298_040 Hb_002298_040 Hb_000193_230--Hb_002298_040 Hb_115919_020 Hb_115919_020 Hb_000193_230--Hb_115919_020 Hb_012305_060 Hb_012305_060 Hb_000193_230--Hb_012305_060 Hb_000284_010 Hb_000284_010 Hb_000193_230--Hb_000284_010 Hb_003057_120 Hb_003057_120 Hb_000387_080--Hb_003057_120 Hb_000387_080--Hb_001366_220 Hb_000057_060 Hb_000057_060 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_011174_070 Hb_011174_070 Hb_000387_080--Hb_011174_070 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020 Hb_000809_040 Hb_000809_040 Hb_001366_220--Hb_000809_040 Hb_000313_380 Hb_000313_380 Hb_001366_220--Hb_000313_380 Hb_000085_310 Hb_000085_310 Hb_001366_220--Hb_000085_310 Hb_001981_090 Hb_001981_090 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040 Hb_001366_230 Hb_001366_230 Hb_001191_100--Hb_001366_230 Hb_000173_170 Hb_000173_170 Hb_001191_100--Hb_000173_170 Hb_000252_040 Hb_000252_040 Hb_001191_100--Hb_000252_040 Hb_065500_050 Hb_065500_050 Hb_001191_100--Hb_065500_050 Hb_000427_110 Hb_000427_110 Hb_001191_100--Hb_000427_110 Hb_001191_100--Hb_001366_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1120.3 80.3129 31.4037 74.4026 912.684 1480.53
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1458.2 1142.46 1307.03 186.929 43.7102

CAGE analysis