Hb_003069_020

Information

Type -
Description -
Location Contig3069: 4337-16474
Sequence    

Annotation

kegg
ID rcu:RCOM_1627470
description hypothetical protein
nr
ID XP_002527268.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q67XL4
description Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1
trembl
ID B9SMP9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1627470 PE=4 SV=1
Gene Ontology
ID GO:0003723
description uncharacterized crm domain-containing protein chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32397: 5835-6011 , PASA_asmbl_32398: 6118-6298 , PASA_asmbl_32399: 6504-6849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003069_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000331_150 0.217291993 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_000590_040 0.2465276639 - - hypothetical protein MPER_09217 [Moniliophthora perniciosa FA553]
4 Hb_004324_350 0.2511260498 - - PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]
5 Hb_070926_010 0.2658710356 - - PREDICTED: mRNA-decapping enzyme subunit 2-like [Populus euphratica]
6 Hb_001766_100 0.2860403163 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000684_370 0.2947358756 - - -
8 Hb_008014_070 0.2970627304 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_143397_010 0.297902035 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
10 Hb_002391_230 0.3006881255 - - hypothetical protein RCOM_0745080 [Ricinus communis]
11 Hb_011218_060 0.3012032679 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
12 Hb_186982_010 0.3026470736 - - PREDICTED: uncharacterized protein LOC104120222 [Nicotiana tomentosiformis]
13 Hb_067188_010 0.305736942 - - -
14 Hb_000483_420 0.3068696651 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
15 Hb_019153_040 0.3093885197 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
16 Hb_000866_150 0.3123987715 - - -
17 Hb_064885_020 0.3148640011 - - -
18 Hb_008376_010 0.315083634 - - -
19 Hb_161072_010 0.315209994 - - -
20 Hb_000193_250 0.3166007146 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]

Gene co-expression network

sample Hb_003069_020 Hb_003069_020 Hb_000331_150 Hb_000331_150 Hb_003069_020--Hb_000331_150 Hb_000590_040 Hb_000590_040 Hb_003069_020--Hb_000590_040 Hb_004324_350 Hb_004324_350 Hb_003069_020--Hb_004324_350 Hb_070926_010 Hb_070926_010 Hb_003069_020--Hb_070926_010 Hb_001766_100 Hb_001766_100 Hb_003069_020--Hb_001766_100 Hb_000684_370 Hb_000684_370 Hb_003069_020--Hb_000684_370 Hb_000038_030 Hb_000038_030 Hb_000331_150--Hb_000038_030 Hb_000291_280 Hb_000291_280 Hb_000331_150--Hb_000291_280 Hb_000397_070 Hb_000397_070 Hb_000331_150--Hb_000397_070 Hb_011218_060 Hb_011218_060 Hb_000331_150--Hb_011218_060 Hb_067188_010 Hb_067188_010 Hb_000331_150--Hb_067188_010 Hb_003540_130 Hb_003540_130 Hb_000590_040--Hb_003540_130 Hb_000590_040--Hb_000331_150 Hb_000590_040--Hb_004324_350 Hb_002028_100 Hb_002028_100 Hb_000590_040--Hb_002028_100 Hb_000590_040--Hb_067188_010 Hb_000380_180 Hb_000380_180 Hb_004324_350--Hb_000380_180 Hb_001488_100 Hb_001488_100 Hb_004324_350--Hb_001488_100 Hb_001767_010 Hb_001767_010 Hb_004324_350--Hb_001767_010 Hb_002498_060 Hb_002498_060 Hb_004324_350--Hb_002498_060 Hb_002739_110 Hb_002739_110 Hb_004324_350--Hb_002739_110 Hb_000249_130 Hb_000249_130 Hb_004324_350--Hb_000249_130 Hb_000866_150 Hb_000866_150 Hb_070926_010--Hb_000866_150 Hb_128558_010 Hb_128558_010 Hb_070926_010--Hb_128558_010 Hb_070926_010--Hb_001766_100 Hb_096225_020 Hb_096225_020 Hb_070926_010--Hb_096225_020 Hb_011909_040 Hb_011909_040 Hb_070926_010--Hb_011909_040 Hb_002983_030 Hb_002983_030 Hb_001766_100--Hb_002983_030 Hb_014549_020 Hb_014549_020 Hb_001766_100--Hb_014549_020 Hb_000193_240 Hb_000193_240 Hb_001766_100--Hb_000193_240 Hb_004453_140 Hb_004453_140 Hb_001766_100--Hb_004453_140 Hb_152439_020 Hb_152439_020 Hb_001766_100--Hb_152439_020 Hb_001100_010 Hb_001100_010 Hb_001766_100--Hb_001100_010 Hb_000014_100 Hb_000014_100 Hb_000684_370--Hb_000014_100 Hb_005657_010 Hb_005657_010 Hb_000684_370--Hb_005657_010 Hb_000684_370--Hb_001767_010 Hb_143629_050 Hb_143629_050 Hb_000684_370--Hb_143629_050 Hb_019153_040 Hb_019153_040 Hb_000684_370--Hb_019153_040 Hb_004800_160 Hb_004800_160 Hb_000684_370--Hb_004800_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0606225 0 0 0 0.116668 0.0213471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0436601 0.159917 0.0351809 0

CAGE analysis