Hb_128558_010

Information

Type -
Description -
Location Contig128558: 736-1464
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EU35
description Uncharacterized protein OS=Theobroma cacao GN=TCM_023328 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128558_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000866_150 0.2243284343 - - -
3 Hb_070926_010 0.2504875512 - - PREDICTED: mRNA-decapping enzyme subunit 2-like [Populus euphratica]
4 Hb_002609_180 0.2687810891 - - -
5 Hb_000421_190 0.2956539923 - - conserved hypothetical protein [Ricinus communis]
6 Hb_096225_020 0.2973857891 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
7 Hb_000816_110 0.30486353 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
8 Hb_004631_220 0.3052549056 - - -
9 Hb_002248_050 0.3072508492 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
10 Hb_019762_010 0.3085273422 - - hypothetical protein JCGZ_12062 [Jatropha curcas]
11 Hb_001488_100 0.3138792766 - - -
12 Hb_103873_010 0.3143527681 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
13 Hb_011909_040 0.3168955291 - - hypothetical protein JCGZ_00750 [Jatropha curcas]
14 Hb_000951_060 0.3196688952 - - mads box protein, putative [Ricinus communis]
15 Hb_000483_420 0.3204780967 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
16 Hb_002301_320 0.3206783946 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
17 Hb_003747_130 0.3224649236 - - -
18 Hb_000463_040 0.3225912596 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
19 Hb_009680_050 0.3247874661 - - -
20 Hb_000340_430 0.3253666011 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_128558_010 Hb_128558_010 Hb_000866_150 Hb_000866_150 Hb_128558_010--Hb_000866_150 Hb_070926_010 Hb_070926_010 Hb_128558_010--Hb_070926_010 Hb_002609_180 Hb_002609_180 Hb_128558_010--Hb_002609_180 Hb_000421_190 Hb_000421_190 Hb_128558_010--Hb_000421_190 Hb_096225_020 Hb_096225_020 Hb_128558_010--Hb_096225_020 Hb_000816_110 Hb_000816_110 Hb_128558_010--Hb_000816_110 Hb_000866_150--Hb_070926_010 Hb_000483_420 Hb_000483_420 Hb_000866_150--Hb_000483_420 Hb_003747_130 Hb_003747_130 Hb_000866_150--Hb_003747_130 Hb_165666_010 Hb_165666_010 Hb_000866_150--Hb_165666_010 Hb_004324_350 Hb_004324_350 Hb_000866_150--Hb_004324_350 Hb_001766_100 Hb_001766_100 Hb_070926_010--Hb_001766_100 Hb_003069_020 Hb_003069_020 Hb_070926_010--Hb_003069_020 Hb_070926_010--Hb_096225_020 Hb_011909_040 Hb_011909_040 Hb_070926_010--Hb_011909_040 Hb_000427_060 Hb_000427_060 Hb_002609_180--Hb_000427_060 Hb_000563_310 Hb_000563_310 Hb_002609_180--Hb_000563_310 Hb_017170_020 Hb_017170_020 Hb_002609_180--Hb_017170_020 Hb_012754_030 Hb_012754_030 Hb_002609_180--Hb_012754_030 Hb_000463_040 Hb_000463_040 Hb_002609_180--Hb_000463_040 Hb_002248_050 Hb_002248_050 Hb_000421_190--Hb_002248_050 Hb_000567_250 Hb_000567_250 Hb_000421_190--Hb_000567_250 Hb_002301_320 Hb_002301_320 Hb_000421_190--Hb_002301_320 Hb_103873_010 Hb_103873_010 Hb_000421_190--Hb_103873_010 Hb_000329_600 Hb_000329_600 Hb_000421_190--Hb_000329_600 Hb_009680_050 Hb_009680_050 Hb_000421_190--Hb_009680_050 Hb_002983_030 Hb_002983_030 Hb_096225_020--Hb_002983_030 Hb_005396_080 Hb_005396_080 Hb_096225_020--Hb_005396_080 Hb_000340_430 Hb_000340_430 Hb_096225_020--Hb_000340_430 Hb_005298_010 Hb_005298_010 Hb_096225_020--Hb_005298_010 Hb_004453_140 Hb_004453_140 Hb_096225_020--Hb_004453_140 Hb_005867_040 Hb_005867_040 Hb_096225_020--Hb_005867_040 Hb_075812_010 Hb_075812_010 Hb_000816_110--Hb_075812_010 Hb_004223_230 Hb_004223_230 Hb_000816_110--Hb_004223_230 Hb_003777_070 Hb_003777_070 Hb_000816_110--Hb_003777_070 Hb_138413_010 Hb_138413_010 Hb_000816_110--Hb_138413_010 Hb_005730_020 Hb_005730_020 Hb_000816_110--Hb_005730_020 Hb_010098_080 Hb_010098_080 Hb_000816_110--Hb_010098_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.066328 0.0336093 0 0 0.0955637 0.189267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.240557 0.215579 0 0

CAGE analysis