Hb_000563_310

Information

Type transcription factor
Description TF Family: ERF
Location Contig563: 184726-185817
Sequence    

Annotation

kegg
ID pop:POPTR_0008s23260g
description AP2 domain transcription factor family protein
nr
ID AGL34962.1
description ethylene-responsive transcription factor 3 [Hevea brasiliensis]
swissprot
ID P42736
description Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2
trembl
ID R4MSX4
description Ethylene-responsive transcription factor 3 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48913: 184731-185915 , PASA_asmbl_48914: 183941-185915
cDNA
(Sanger)
(ID:Location)		 007_F01.ab1: 185060-185915 , 010_D09.ab1: 184902-185852 , 019_O15.ab1: 184946-185852 , 042_C20.ab1: 184923-185851 , 053_F03.ab1: 185032-185915

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_310 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
2 Hb_002784_140 0.1675656736 - - glutamate receptor 2 plant, putative [Ricinus communis]
3 Hb_000340_440 0.1935069086 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
4 Hb_005772_010 0.1969676798 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
5 Hb_003579_020 0.2014607672 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
6 Hb_000258_280 0.2083274959 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
7 Hb_009880_010 0.2085643654 - - PREDICTED: cytochrome c [Jatropha curcas]
8 Hb_006132_050 0.2108315004 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
9 Hb_002908_070 0.2118242667 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
10 Hb_043623_010 0.2128542277 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
11 Hb_004414_040 0.2171816554 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
12 Hb_002876_360 0.2190418812 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
13 Hb_012754_030 0.2253666309 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
14 Hb_002344_070 0.2272695274 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
15 Hb_003044_090 0.2295240936 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
16 Hb_003398_140 0.2343515521 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_000094_110 0.2361285816 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000103_060 0.2363322145 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
19 Hb_001512_050 0.237090258 - - copine, putative [Ricinus communis]
20 Hb_000617_050 0.2382131746 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]

Gene co-expression network

sample Hb_000563_310 Hb_000563_310 Hb_002784_140 Hb_002784_140 Hb_000563_310--Hb_002784_140 Hb_000340_440 Hb_000340_440 Hb_000563_310--Hb_000340_440 Hb_005772_010 Hb_005772_010 Hb_000563_310--Hb_005772_010 Hb_003579_020 Hb_003579_020 Hb_000563_310--Hb_003579_020 Hb_000258_280 Hb_000258_280 Hb_000563_310--Hb_000258_280 Hb_009880_010 Hb_009880_010 Hb_000563_310--Hb_009880_010 Hb_004414_040 Hb_004414_040 Hb_002784_140--Hb_004414_040 Hb_002784_140--Hb_000340_440 Hb_006132_050 Hb_006132_050 Hb_002784_140--Hb_006132_050 Hb_001277_080 Hb_001277_080 Hb_002784_140--Hb_001277_080 Hb_000316_100 Hb_000316_100 Hb_002784_140--Hb_000316_100 Hb_000340_440--Hb_000316_100 Hb_000094_110 Hb_000094_110 Hb_000340_440--Hb_000094_110 Hb_000175_130 Hb_000175_130 Hb_000340_440--Hb_000175_130 Hb_000340_440--Hb_006132_050 Hb_148850_010 Hb_148850_010 Hb_000340_440--Hb_148850_010 Hb_005772_010--Hb_004414_040 Hb_005772_010--Hb_002784_140 Hb_001102_100 Hb_001102_100 Hb_005772_010--Hb_001102_100 Hb_002908_070 Hb_002908_070 Hb_005772_010--Hb_002908_070 Hb_005772_010--Hb_000340_440 Hb_000122_040 Hb_000122_040 Hb_003579_020--Hb_000122_040 Hb_000103_060 Hb_000103_060 Hb_003579_020--Hb_000103_060 Hb_001214_140 Hb_001214_140 Hb_003579_020--Hb_001214_140 Hb_097007_010 Hb_097007_010 Hb_003579_020--Hb_097007_010 Hb_043623_010 Hb_043623_010 Hb_003579_020--Hb_043623_010 Hb_004005_010 Hb_004005_010 Hb_003579_020--Hb_004005_010 Hb_002344_070 Hb_002344_070 Hb_000258_280--Hb_002344_070 Hb_003549_020 Hb_003549_020 Hb_000258_280--Hb_003549_020 Hb_007497_030 Hb_007497_030 Hb_000258_280--Hb_007497_030 Hb_001386_050 Hb_001386_050 Hb_000258_280--Hb_001386_050 Hb_000878_020 Hb_000878_020 Hb_000258_280--Hb_000878_020 Hb_004735_050 Hb_004735_050 Hb_000258_280--Hb_004735_050 Hb_000042_260 Hb_000042_260 Hb_009880_010--Hb_000042_260 Hb_000331_640 Hb_000331_640 Hb_009880_010--Hb_000331_640 Hb_008948_050 Hb_008948_050 Hb_009880_010--Hb_008948_050 Hb_000645_140 Hb_000645_140 Hb_009880_010--Hb_000645_140 Hb_002909_130 Hb_002909_130 Hb_009880_010--Hb_002909_130 Hb_001512_050 Hb_001512_050 Hb_009880_010--Hb_001512_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
206.434 154.05 144.548 36.3294 393.88 152.247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
204.545 2245.89 280.289 138.896 4.58491

CAGE analysis