Hb_001102_100

Information

Type -
Description -
Location Contig1102: 89644-103343
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39030g
description POPTRDRAFT_176517; hypothetical protein
nr
ID XP_011045564.1
description PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GGZ5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s39030g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_100 0.0 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
2 Hb_000270_730 0.1956599487 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
3 Hb_001266_030 0.2041143168 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
4 Hb_001277_080 0.2064923643 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
5 Hb_005772_010 0.207515968 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
6 Hb_183612_080 0.2080954392 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
7 Hb_002784_140 0.2153126696 - - glutamate receptor 2 plant, putative [Ricinus communis]
8 Hb_004414_040 0.2153491438 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
9 Hb_001085_180 0.2163832323 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000340_440 0.220607349 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
11 Hb_000078_020 0.2219750586 - - -
12 Hb_027892_040 0.2249777286 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
13 Hb_004968_070 0.2253877514 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000258_280 0.2300486419 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
15 Hb_086692_020 0.2392896959 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
16 Hb_000316_100 0.2418567159 - - protein with unknown function [Ricinus communis]
17 Hb_012305_020 0.2421357372 - - beta-1,3-glucanase [Hevea brasiliensis]
18 Hb_001842_080 0.2434725391 - - -
19 Hb_000398_030 0.244776365 - - conserved hypothetical protein [Ricinus communis]
20 Hb_043623_010 0.244989939 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]

Gene co-expression network

sample Hb_001102_100 Hb_001102_100 Hb_000270_730 Hb_000270_730 Hb_001102_100--Hb_000270_730 Hb_001266_030 Hb_001266_030 Hb_001102_100--Hb_001266_030 Hb_001277_080 Hb_001277_080 Hb_001102_100--Hb_001277_080 Hb_005772_010 Hb_005772_010 Hb_001102_100--Hb_005772_010 Hb_183612_080 Hb_183612_080 Hb_001102_100--Hb_183612_080 Hb_002784_140 Hb_002784_140 Hb_001102_100--Hb_002784_140 Hb_001842_080 Hb_001842_080 Hb_000270_730--Hb_001842_080 Hb_000398_030 Hb_000398_030 Hb_000270_730--Hb_000398_030 Hb_000270_730--Hb_183612_080 Hb_001922_080 Hb_001922_080 Hb_000270_730--Hb_001922_080 Hb_000316_100 Hb_000316_100 Hb_000270_730--Hb_000316_100 Hb_027892_040 Hb_027892_040 Hb_000270_730--Hb_027892_040 Hb_044653_060 Hb_044653_060 Hb_001266_030--Hb_044653_060 Hb_012053_010 Hb_012053_010 Hb_001266_030--Hb_012053_010 Hb_000045_210 Hb_000045_210 Hb_001266_030--Hb_000045_210 Hb_001266_030--Hb_027892_040 Hb_000431_160 Hb_000431_160 Hb_001266_030--Hb_000431_160 Hb_000617_110 Hb_000617_110 Hb_001266_030--Hb_000617_110 Hb_004414_040 Hb_004414_040 Hb_001277_080--Hb_004414_040 Hb_004968_070 Hb_004968_070 Hb_001277_080--Hb_004968_070 Hb_001277_080--Hb_002784_140 Hb_001277_080--Hb_000270_730 Hb_002784_150 Hb_002784_150 Hb_001277_080--Hb_002784_150 Hb_005772_010--Hb_004414_040 Hb_000563_310 Hb_000563_310 Hb_005772_010--Hb_000563_310 Hb_005772_010--Hb_002784_140 Hb_002908_070 Hb_002908_070 Hb_005772_010--Hb_002908_070 Hb_000340_440 Hb_000340_440 Hb_005772_010--Hb_000340_440 Hb_183612_080--Hb_000617_110 Hb_001842_120 Hb_001842_120 Hb_183612_080--Hb_001842_120 Hb_183612_080--Hb_001842_080 Hb_004159_050 Hb_004159_050 Hb_183612_080--Hb_004159_050 Hb_000613_170 Hb_000613_170 Hb_183612_080--Hb_000613_170 Hb_002784_140--Hb_004414_040 Hb_002784_140--Hb_000340_440 Hb_002784_140--Hb_000563_310 Hb_006132_050 Hb_006132_050 Hb_002784_140--Hb_006132_050 Hb_002784_140--Hb_000316_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0274847 0 0.00730628 0.00988724 0.00481862 0.0257869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0327264 0.266131 0.0164866 0.0136014 0

CAGE analysis