Hb_002908_070

Information

Type -
Description -
Location Contig2908: 95034-110939
Sequence    

Annotation

kegg
ID rcu:RCOM_0720220
description DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
nr
ID XP_002526324.1
description DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
swissprot
ID Q5YLB5
description DNA gyrase subunit A, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRA PE=2 SV=1
trembl
ID B9SK05
description DNA gyrase subunit A, chloroplast/mitochondrial, putative OS=Ricinus communis GN=RCOM_0720220 PE=4 SV=1
Gene Ontology
ID GO:0005694
description dna gyrase subunit chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30459: 62914-110837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002908_070 0.0 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
2 Hb_043623_010 0.1169745891 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
3 Hb_000622_080 0.1480619462 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
4 Hb_000289_070 0.1955967757 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001449_100 0.2018009753 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
6 Hb_001266_030 0.2078703151 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
7 Hb_009880_010 0.2093301749 - - PREDICTED: cytochrome c [Jatropha curcas]
8 Hb_005772_010 0.2110310301 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
9 Hb_000563_310 0.2118242667 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
10 Hb_002784_100 0.2120360142 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
11 Hb_012053_010 0.2131254263 - - srpk, putative [Ricinus communis]
12 Hb_001449_090 0.214893764 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
13 Hb_028271_020 0.215547984 - - acyl-CoA oxidase, putative [Ricinus communis]
14 Hb_003057_020 0.2161731733 - - 40S ribosomal protein S23, putative [Ricinus communis]
15 Hb_002811_090 0.2191135602 - - 40S ribosomal protein S24A [Hevea brasiliensis]
16 Hb_000258_280 0.2204904363 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
17 Hb_011609_110 0.220971304 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
18 Hb_033834_050 0.2256664405 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000212_210 0.228077981 - - unnamed protein product [Coffea canephora]
20 Hb_003038_190 0.2306835783 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]

Gene co-expression network

sample Hb_002908_070 Hb_002908_070 Hb_043623_010 Hb_043623_010 Hb_002908_070--Hb_043623_010 Hb_000622_080 Hb_000622_080 Hb_002908_070--Hb_000622_080 Hb_000289_070 Hb_000289_070 Hb_002908_070--Hb_000289_070 Hb_001449_100 Hb_001449_100 Hb_002908_070--Hb_001449_100 Hb_001266_030 Hb_001266_030 Hb_002908_070--Hb_001266_030 Hb_009880_010 Hb_009880_010 Hb_002908_070--Hb_009880_010 Hb_000258_280 Hb_000258_280 Hb_043623_010--Hb_000258_280 Hb_001449_090 Hb_001449_090 Hb_043623_010--Hb_001449_090 Hb_000203_020 Hb_000203_020 Hb_043623_010--Hb_000203_020 Hb_002811_090 Hb_002811_090 Hb_043623_010--Hb_002811_090 Hb_000212_210 Hb_000212_210 Hb_043623_010--Hb_000212_210 Hb_002784_100 Hb_002784_100 Hb_000622_080--Hb_002784_100 Hb_000002_260 Hb_000002_260 Hb_000622_080--Hb_000002_260 Hb_000622_080--Hb_001449_100 Hb_002217_460 Hb_002217_460 Hb_000622_080--Hb_002217_460 Hb_000622_080--Hb_043623_010 Hb_000289_070--Hb_002811_090 Hb_027472_160 Hb_027472_160 Hb_000289_070--Hb_027472_160 Hb_002909_130 Hb_002909_130 Hb_000289_070--Hb_002909_130 Hb_000788_010 Hb_000788_010 Hb_000289_070--Hb_000788_010 Hb_000289_070--Hb_009880_010 Hb_003057_020 Hb_003057_020 Hb_000289_070--Hb_003057_020 Hb_028271_020 Hb_028271_020 Hb_001449_100--Hb_028271_020 Hb_004679_060 Hb_004679_060 Hb_001449_100--Hb_004679_060 Hb_001449_100--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_001449_100--Hb_011609_110 Hb_003398_020 Hb_003398_020 Hb_001449_100--Hb_003398_020 Hb_007017_010 Hb_007017_010 Hb_001449_100--Hb_007017_010 Hb_044653_060 Hb_044653_060 Hb_001266_030--Hb_044653_060 Hb_012053_010 Hb_012053_010 Hb_001266_030--Hb_012053_010 Hb_000045_210 Hb_000045_210 Hb_001266_030--Hb_000045_210 Hb_027892_040 Hb_027892_040 Hb_001266_030--Hb_027892_040 Hb_000431_160 Hb_000431_160 Hb_001266_030--Hb_000431_160 Hb_000617_110 Hb_000617_110 Hb_001266_030--Hb_000617_110 Hb_000042_260 Hb_000042_260 Hb_009880_010--Hb_000042_260 Hb_000331_640 Hb_000331_640 Hb_009880_010--Hb_000331_640 Hb_008948_050 Hb_008948_050 Hb_009880_010--Hb_008948_050 Hb_000645_140 Hb_000645_140 Hb_009880_010--Hb_000645_140 Hb_009880_010--Hb_002909_130 Hb_001512_050 Hb_001512_050 Hb_009880_010--Hb_001512_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.24741 9.01846 10.7468 8.74058 8.02449 9.22609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.9843 142.893 10.3231 11.1336 10.9058

CAGE analysis