Hb_000622_080

Information

Type -
Description -
Location Contig622: 85593-90745
Sequence    

Annotation

kegg
ID tcc:TCM_005190
description Indole-3-acetic acid-amido synthetase GH3.5 isoform 2
nr
ID AFH35030.1
description auxin-responsive GH3 family protein [Hevea brasiliensis]
swissprot
ID Q6I581
description Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1
trembl
ID K7P6R8
description Auxin-responsive GH3 family protein OS=Hevea brasiliensis GN=GH3 PE=2 SV=1
Gene Ontology
ID GO:0019899
description probable indole-3-acetic acid-amido synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51549: 85567-89902 , PASA_asmbl_51550: 88562-90704
cDNA
(Sanger)
(ID:Location)		 012_M23.ab1: 88562-90704

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_080 0.0 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
2 Hb_002908_070 0.1480619462 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
3 Hb_002784_100 0.2124087409 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
4 Hb_000002_260 0.2191408295 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001449_100 0.2223712126 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
6 Hb_002217_460 0.2260001834 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
7 Hb_043623_010 0.2286510154 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
8 Hb_000523_110 0.2333433357 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
9 Hb_005321_010 0.240476618 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
10 Hb_033834_050 0.2435559423 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012022_140 0.2492227987 - - ADP,ATP carrier protein, putative [Ricinus communis]
12 Hb_011628_020 0.2536771447 - - conserved hypothetical protein [Ricinus communis]
13 Hb_042871_010 0.2607965482 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
14 Hb_000289_070 0.2608050011 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001638_070 0.2623860668 transcription factor TF Family: bHLH Basic helix-loop-helix DNA-binding family protein [Theobroma cacao]
16 Hb_028271_020 0.2626297464 - - acyl-CoA oxidase, putative [Ricinus communis]
17 Hb_003376_380 0.2647950408 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
18 Hb_007441_170 0.2674846083 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
19 Hb_001766_030 0.2675551007 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
20 Hb_004108_110 0.2687420626 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000622_080 Hb_000622_080 Hb_002908_070 Hb_002908_070 Hb_000622_080--Hb_002908_070 Hb_002784_100 Hb_002784_100 Hb_000622_080--Hb_002784_100 Hb_000002_260 Hb_000002_260 Hb_000622_080--Hb_000002_260 Hb_001449_100 Hb_001449_100 Hb_000622_080--Hb_001449_100 Hb_002217_460 Hb_002217_460 Hb_000622_080--Hb_002217_460 Hb_043623_010 Hb_043623_010 Hb_000622_080--Hb_043623_010 Hb_002908_070--Hb_043623_010 Hb_000289_070 Hb_000289_070 Hb_002908_070--Hb_000289_070 Hb_002908_070--Hb_001449_100 Hb_001266_030 Hb_001266_030 Hb_002908_070--Hb_001266_030 Hb_009880_010 Hb_009880_010 Hb_002908_070--Hb_009880_010 Hb_033834_050 Hb_033834_050 Hb_002784_100--Hb_033834_050 Hb_028271_020 Hb_028271_020 Hb_002784_100--Hb_028271_020 Hb_002784_100--Hb_001449_100 Hb_000656_410 Hb_000656_410 Hb_002784_100--Hb_000656_410 Hb_011609_110 Hb_011609_110 Hb_002784_100--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_002784_100--Hb_042871_010 Hb_000002_260--Hb_002217_460 Hb_005321_010 Hb_005321_010 Hb_000002_260--Hb_005321_010 Hb_001766_030 Hb_001766_030 Hb_000002_260--Hb_001766_030 Hb_001016_080 Hb_001016_080 Hb_000002_260--Hb_001016_080 Hb_004108_110 Hb_004108_110 Hb_000002_260--Hb_004108_110 Hb_001225_010 Hb_001225_010 Hb_000002_260--Hb_001225_010 Hb_001449_100--Hb_028271_020 Hb_004679_060 Hb_004679_060 Hb_001449_100--Hb_004679_060 Hb_001449_100--Hb_011609_110 Hb_003398_020 Hb_003398_020 Hb_001449_100--Hb_003398_020 Hb_007017_010 Hb_007017_010 Hb_001449_100--Hb_007017_010 Hb_000099_070 Hb_000099_070 Hb_002217_460--Hb_000099_070 Hb_002217_460--Hb_005321_010 Hb_091889_010 Hb_091889_010 Hb_002217_460--Hb_091889_010 Hb_002217_460--Hb_001016_080 Hb_002217_460--Hb_001449_100 Hb_000258_280 Hb_000258_280 Hb_043623_010--Hb_000258_280 Hb_001449_090 Hb_001449_090 Hb_043623_010--Hb_001449_090 Hb_000203_020 Hb_000203_020 Hb_043623_010--Hb_000203_020 Hb_002811_090 Hb_002811_090 Hb_043623_010--Hb_002811_090 Hb_000212_210 Hb_000212_210 Hb_043623_010--Hb_000212_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09349 5.99375 6.94933 7.38091 2.15373 1.63362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25044 67.5836 4.537 3.43687 9.67044

CAGE analysis