Hb_000289_070

Information

Type -
Description -
Location Contig289: 120107-123808
Sequence    

Annotation

kegg
ID rcu:RCOM_0723680
description hypothetical protein
nr
ID XP_002524870.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6PBU0
description Protein FAM136A OS=Danio rerio GN=fam136a PE=2 SV=1
trembl
ID B9SFV1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0723680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30165: 118619-119816 , PASA_asmbl_30166: 120128-123854
cDNA
(Sanger)
(ID:Location)		 009_G14.ab1: 120128-123733 , 048_M24.ab1: 120128-123700

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000289_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002811_090 0.1057559786 - - 40S ribosomal protein S24A [Hevea brasiliensis]
3 Hb_027472_160 0.1209065138 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
4 Hb_002909_130 0.1247570677 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_000788_010 0.1251196087 - - 40S ribosomal protein S16A [Hevea brasiliensis]
6 Hb_009880_010 0.1254283832 - - PREDICTED: cytochrome c [Jatropha curcas]
7 Hb_003057_020 0.1280026054 - - 40S ribosomal protein S23, putative [Ricinus communis]
8 Hb_000676_160 0.128612456 - - folate carrier protein, putative [Ricinus communis]
9 Hb_000093_110 0.1296658395 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
10 Hb_000331_640 0.1303771282 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
11 Hb_000645_140 0.1334643024 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
12 Hb_001789_050 0.1342211884 - - 60S ribosomal protein L36-2 [Morus notabilis]
13 Hb_000042_260 0.1400869013 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
14 Hb_000212_210 0.1410376171 - - unnamed protein product [Coffea canephora]
15 Hb_007120_090 0.1416915332 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
16 Hb_012022_140 0.1422091382 - - ADP,ATP carrier protein, putative [Ricinus communis]
17 Hb_000735_040 0.1450017982 - - 60S ribosomal protein L32A [Hevea brasiliensis]
18 Hb_000111_100 0.1454921835 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
19 Hb_001449_090 0.1457029264 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
20 Hb_001085_270 0.1457797728 - - 60S ribosomal protein L13aA [Hevea brasiliensis]

Gene co-expression network

sample Hb_000289_070 Hb_000289_070 Hb_002811_090 Hb_002811_090 Hb_000289_070--Hb_002811_090 Hb_027472_160 Hb_027472_160 Hb_000289_070--Hb_027472_160 Hb_002909_130 Hb_002909_130 Hb_000289_070--Hb_002909_130 Hb_000788_010 Hb_000788_010 Hb_000289_070--Hb_000788_010 Hb_009880_010 Hb_009880_010 Hb_000289_070--Hb_009880_010 Hb_003057_020 Hb_003057_020 Hb_000289_070--Hb_003057_020 Hb_002811_090--Hb_003057_020 Hb_000212_210 Hb_000212_210 Hb_002811_090--Hb_000212_210 Hb_007120_090 Hb_007120_090 Hb_002811_090--Hb_007120_090 Hb_002811_090--Hb_027472_160 Hb_001789_050 Hb_001789_050 Hb_002811_090--Hb_001789_050 Hb_007245_080 Hb_007245_080 Hb_002811_090--Hb_007245_080 Hb_003020_330 Hb_003020_330 Hb_027472_160--Hb_003020_330 Hb_000645_140 Hb_000645_140 Hb_027472_160--Hb_000645_140 Hb_000915_120 Hb_000915_120 Hb_027472_160--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_027472_160--Hb_000948_220 Hb_027472_160--Hb_007120_090 Hb_172221_010 Hb_172221_010 Hb_002909_130--Hb_172221_010 Hb_000042_260 Hb_000042_260 Hb_002909_130--Hb_000042_260 Hb_000329_020 Hb_000329_020 Hb_002909_130--Hb_000329_020 Hb_001085_270 Hb_001085_270 Hb_002909_130--Hb_001085_270 Hb_001158_230 Hb_001158_230 Hb_002909_130--Hb_001158_230 Hb_008948_050 Hb_008948_050 Hb_002909_130--Hb_008948_050 Hb_001369_170 Hb_001369_170 Hb_000788_010--Hb_001369_170 Hb_006478_160 Hb_006478_160 Hb_000788_010--Hb_006478_160 Hb_000576_060 Hb_000576_060 Hb_000788_010--Hb_000576_060 Hb_000567_410 Hb_000567_410 Hb_000788_010--Hb_000567_410 Hb_000788_010--Hb_001085_270 Hb_002811_080 Hb_002811_080 Hb_000788_010--Hb_002811_080 Hb_009880_010--Hb_000042_260 Hb_000331_640 Hb_000331_640 Hb_009880_010--Hb_000331_640 Hb_009880_010--Hb_008948_050 Hb_009880_010--Hb_000645_140 Hb_009880_010--Hb_002909_130 Hb_001512_050 Hb_001512_050 Hb_009880_010--Hb_001512_050 Hb_003057_020--Hb_000212_210 Hb_000454_180 Hb_000454_180 Hb_003057_020--Hb_000454_180 Hb_003057_020--Hb_027472_160 Hb_003057_020--Hb_001789_050 Hb_003057_020--Hb_007120_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.98636 2.06906 9.03398 4.72422 2.84229 3.93805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.91005 43.4911 6.479 8.03877 6.63517

CAGE analysis