Hb_009880_010

Information

Type -
Description -
Location Contig9880: 1119-1987
Sequence    

Annotation

kegg
ID rcu:RCOM_1433300
description Cytochrome c, putative
nr
ID XP_012066709.1
description PREDICTED: cytochrome c [Jatropha curcas]
swissprot
ID P00058
description Cytochrome c OS=Gossypium barbadense PE=1 SV=1
trembl
ID A0A067L5F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00265 PE=3 SV=1
Gene Ontology
ID GO:0009055
description cytochrome c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009880_010 0.0 - - PREDICTED: cytochrome c [Jatropha curcas]
2 Hb_000042_260 0.0980786852 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
3 Hb_000331_640 0.0988609367 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
4 Hb_008948_050 0.1034852158 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
5 Hb_000645_140 0.1058156096 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
6 Hb_002909_130 0.1133362779 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_001512_050 0.1134727332 - - copine, putative [Ricinus communis]
8 Hb_019516_100 0.1168556131 - - 40S ribosomal protein S14, putative [Ricinus communis]
9 Hb_002588_010 0.1187948888 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
10 Hb_000329_020 0.1225290346 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
11 Hb_172221_010 0.1251126557 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
12 Hb_000289_070 0.1254283832 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000093_110 0.1255050663 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
14 Hb_012753_230 0.1346120173 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
15 Hb_116349_110 0.1350200707 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
16 Hb_002811_080 0.1355038822 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
17 Hb_000062_650 0.1368572041 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
18 Hb_000212_210 0.1370511258 - - unnamed protein product [Coffea canephora]
19 Hb_002259_070 0.1404396642 - - taz protein, putative [Ricinus communis]
20 Hb_000331_700 0.1430164152 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]

Gene co-expression network

sample Hb_009880_010 Hb_009880_010 Hb_000042_260 Hb_000042_260 Hb_009880_010--Hb_000042_260 Hb_000331_640 Hb_000331_640 Hb_009880_010--Hb_000331_640 Hb_008948_050 Hb_008948_050 Hb_009880_010--Hb_008948_050 Hb_000645_140 Hb_000645_140 Hb_009880_010--Hb_000645_140 Hb_002909_130 Hb_002909_130 Hb_009880_010--Hb_002909_130 Hb_001512_050 Hb_001512_050 Hb_009880_010--Hb_001512_050 Hb_019516_100 Hb_019516_100 Hb_000042_260--Hb_019516_100 Hb_172221_010 Hb_172221_010 Hb_000042_260--Hb_172221_010 Hb_002588_010 Hb_002588_010 Hb_000042_260--Hb_002588_010 Hb_000042_260--Hb_002909_130 Hb_000329_020 Hb_000329_020 Hb_000042_260--Hb_000329_020 Hb_026398_010 Hb_026398_010 Hb_000042_260--Hb_026398_010 Hb_000331_640--Hb_000329_020 Hb_000331_640--Hb_002909_130 Hb_000331_640--Hb_000042_260 Hb_000062_650 Hb_000062_650 Hb_000331_640--Hb_000062_650 Hb_002811_080 Hb_002811_080 Hb_000331_640--Hb_002811_080 Hb_008948_050--Hb_000645_140 Hb_008948_050--Hb_002588_010 Hb_001386_050 Hb_001386_050 Hb_008948_050--Hb_001386_050 Hb_008948_050--Hb_000042_260 Hb_008948_050--Hb_002909_130 Hb_008948_050--Hb_019516_100 Hb_000093_110 Hb_000093_110 Hb_000645_140--Hb_000093_110 Hb_000645_140--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_000645_140--Hb_000062_390 Hb_000567_410 Hb_000567_410 Hb_000645_140--Hb_000567_410 Hb_000645_140--Hb_019516_100 Hb_002909_130--Hb_172221_010 Hb_002909_130--Hb_000329_020 Hb_001085_270 Hb_001085_270 Hb_002909_130--Hb_001085_270 Hb_001158_230 Hb_001158_230 Hb_002909_130--Hb_001158_230 Hb_007245_080 Hb_007245_080 Hb_001512_050--Hb_007245_080 Hb_116349_110 Hb_116349_110 Hb_001512_050--Hb_116349_110 Hb_001512_050--Hb_000062_650 Hb_000576_060 Hb_000576_060 Hb_001512_050--Hb_000576_060 Hb_001512_050--Hb_002588_010 Hb_004223_040 Hb_004223_040 Hb_001512_050--Hb_004223_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0128 12.3692 27.7844 10.3669 23.5929 13.9474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.3559 172.355 28.1421 23.8063 12.5797

CAGE analysis