Hb_004968_070

Information

Type -
Description -
Location Contig4968: 76897-77508
Sequence    

Annotation

kegg
ID rcu:RCOM_1483100
description hypothetical protein
nr
ID XP_002524254.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SE35
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1483100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45508: 76841-77492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004968_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002784_150 0.1575359135 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
3 Hb_010589_050 0.1626985211 - - -
4 Hb_058143_010 0.1667163987 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
5 Hb_032202_250 0.1671682479 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
6 Hb_001842_080 0.1690528121 - - -
7 Hb_001277_080 0.1723663279 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
8 Hb_001085_180 0.1739799574 - - conserved hypothetical protein [Ricinus communis]
9 Hb_039946_010 0.1844082303 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
10 Hb_027892_040 0.1899156417 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
11 Hb_000270_730 0.1907240281 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
12 Hb_005520_010 0.1913314734 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
13 Hb_000316_100 0.191388544 - - protein with unknown function [Ricinus communis]
14 Hb_001767_050 0.1930046296 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000258_180 0.1985111152 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
16 Hb_183612_090 0.2040345702 - - -
17 Hb_000012_070 0.2042212545 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000033_040 0.2045542628 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002478_020 0.2056222914 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
20 Hb_000352_160 0.2107864839 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004968_070 Hb_004968_070 Hb_002784_150 Hb_002784_150 Hb_004968_070--Hb_002784_150 Hb_010589_050 Hb_010589_050 Hb_004968_070--Hb_010589_050 Hb_058143_010 Hb_058143_010 Hb_004968_070--Hb_058143_010 Hb_032202_250 Hb_032202_250 Hb_004968_070--Hb_032202_250 Hb_001842_080 Hb_001842_080 Hb_004968_070--Hb_001842_080 Hb_001277_080 Hb_001277_080 Hb_004968_070--Hb_001277_080 Hb_000033_040 Hb_000033_040 Hb_002784_150--Hb_000033_040 Hb_002784_150--Hb_058143_010 Hb_005520_010 Hb_005520_010 Hb_002784_150--Hb_005520_010 Hb_086692_020 Hb_086692_020 Hb_002784_150--Hb_086692_020 Hb_001214_080 Hb_001214_080 Hb_002784_150--Hb_001214_080 Hb_000352_180 Hb_000352_180 Hb_010589_050--Hb_000352_180 Hb_012586_020 Hb_012586_020 Hb_010589_050--Hb_012586_020 Hb_039946_010 Hb_039946_010 Hb_010589_050--Hb_039946_010 Hb_010589_050--Hb_058143_010 Hb_004942_020 Hb_004942_020 Hb_010589_050--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_010589_050--Hb_000352_160 Hb_058143_010--Hb_004942_020 Hb_058143_010--Hb_000352_180 Hb_058143_010--Hb_012586_020 Hb_002478_020 Hb_002478_020 Hb_058143_010--Hb_002478_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_003226_240 Hb_003226_240 Hb_032202_250--Hb_003226_240 Hb_032202_250--Hb_001842_080 Hb_000300_210 Hb_000300_210 Hb_032202_250--Hb_000300_210 Hb_001433_100 Hb_001433_100 Hb_032202_250--Hb_001433_100 Hb_034482_040 Hb_034482_040 Hb_032202_250--Hb_034482_040 Hb_002989_040 Hb_002989_040 Hb_032202_250--Hb_002989_040 Hb_000270_730 Hb_000270_730 Hb_001842_080--Hb_000270_730 Hb_001922_080 Hb_001922_080 Hb_001842_080--Hb_001922_080 Hb_001842_080--Hb_000316_100 Hb_183612_080 Hb_183612_080 Hb_001842_080--Hb_183612_080 Hb_010172_100 Hb_010172_100 Hb_001842_080--Hb_010172_100 Hb_004414_040 Hb_004414_040 Hb_001277_080--Hb_004414_040 Hb_002784_140 Hb_002784_140 Hb_001277_080--Hb_002784_140 Hb_001102_100 Hb_001102_100 Hb_001277_080--Hb_001102_100 Hb_001277_080--Hb_000270_730 Hb_001277_080--Hb_002784_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
162.138 22.166 1.75688 10.2697 22.197 40.4484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
366.093 2834.15 403.574 69.6416 9.1404

CAGE analysis