Hb_005520_010

Information

Type -
Description -
Location Contig5520: 3651-19350
Sequence    

Annotation

kegg
ID vvi:100265616
description LRR receptor-like serine/threonine-protein kinase FLS2
nr
ID KDP35941.1
description hypothetical protein JCGZ_09913 [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A067KI84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09913 PE=4 SV=1
Gene Ontology
ID GO:0003824
description lrr receptor-like serine threonine-protein kinase fls2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48297: 17698-18087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005520_010 0.0 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
2 Hb_004968_070 0.1913314734 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000033_040 0.194017747 - - conserved hypothetical protein [Ricinus communis]
4 Hb_058143_010 0.1972030666 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
5 Hb_002784_150 0.1990871566 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
6 Hb_027892_040 0.2022585156 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
7 Hb_141194_010 0.2103594296 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
8 Hb_001767_050 0.2127189465 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001186_070 0.2136060706 - - PREDICTED: F-box protein FBW2-like [Gossypium raimondii]
10 Hb_001433_100 0.2142876681 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
11 Hb_004100_090 0.2146948249 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
12 Hb_039946_010 0.2181903036 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
13 Hb_027337_120 0.2189332847 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
14 Hb_002478_020 0.2191489364 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
15 Hb_138455_010 0.219989993 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_012053_010 0.2233354921 - - srpk, putative [Ricinus communis]
17 Hb_000045_210 0.2241234131 - - -
18 Hb_000042_100 0.2276592233 - - PREDICTED: uncharacterized protein LOC104448410 [Eucalyptus grandis]
19 Hb_000352_160 0.2278880477 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001143_070 0.2289695613 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_005520_010 Hb_005520_010 Hb_004968_070 Hb_004968_070 Hb_005520_010--Hb_004968_070 Hb_000033_040 Hb_000033_040 Hb_005520_010--Hb_000033_040 Hb_058143_010 Hb_058143_010 Hb_005520_010--Hb_058143_010 Hb_002784_150 Hb_002784_150 Hb_005520_010--Hb_002784_150 Hb_027892_040 Hb_027892_040 Hb_005520_010--Hb_027892_040 Hb_141194_010 Hb_141194_010 Hb_005520_010--Hb_141194_010 Hb_004968_070--Hb_002784_150 Hb_010589_050 Hb_010589_050 Hb_004968_070--Hb_010589_050 Hb_004968_070--Hb_058143_010 Hb_032202_250 Hb_032202_250 Hb_004968_070--Hb_032202_250 Hb_001842_080 Hb_001842_080 Hb_004968_070--Hb_001842_080 Hb_001277_080 Hb_001277_080 Hb_004968_070--Hb_001277_080 Hb_027337_120 Hb_027337_120 Hb_000033_040--Hb_027337_120 Hb_000033_040--Hb_002784_150 Hb_000033_040--Hb_027892_040 Hb_000589_160 Hb_000589_160 Hb_000033_040--Hb_000589_160 Hb_000033_040--Hb_058143_010 Hb_000078_020 Hb_000078_020 Hb_000033_040--Hb_000078_020 Hb_004942_020 Hb_004942_020 Hb_058143_010--Hb_004942_020 Hb_000352_180 Hb_000352_180 Hb_058143_010--Hb_000352_180 Hb_058143_010--Hb_010589_050 Hb_012586_020 Hb_012586_020 Hb_058143_010--Hb_012586_020 Hb_002478_020 Hb_002478_020 Hb_058143_010--Hb_002478_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_002784_150--Hb_058143_010 Hb_086692_020 Hb_086692_020 Hb_002784_150--Hb_086692_020 Hb_001214_080 Hb_001214_080 Hb_002784_150--Hb_001214_080 Hb_000045_210 Hb_000045_210 Hb_027892_040--Hb_000045_210 Hb_012053_010 Hb_012053_010 Hb_027892_040--Hb_012053_010 Hb_001266_030 Hb_001266_030 Hb_027892_040--Hb_001266_030 Hb_044653_060 Hb_044653_060 Hb_027892_040--Hb_044653_060 Hb_000431_160 Hb_000431_160 Hb_027892_040--Hb_000431_160 Hb_027892_040--Hb_000316_100 Hb_141194_010--Hb_000045_210 Hb_034482_040 Hb_034482_040 Hb_141194_010--Hb_034482_040 Hb_003007_010 Hb_003007_010 Hb_141194_010--Hb_003007_010 Hb_003226_240 Hb_003226_240 Hb_141194_010--Hb_003226_240 Hb_001143_070 Hb_001143_070 Hb_141194_010--Hb_001143_070 Hb_000592_060 Hb_000592_060 Hb_141194_010--Hb_000592_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0417798 0.0206926 0.0134603 0.0118552 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0792088 0.561038 0.144128 0.00246631 0.0134052

CAGE analysis