Hb_000078_020

Information

Type -
Description -
Location Contig78: 46703-46969
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_020 0.0 - - -
2 Hb_000316_100 0.1578148389 - - protein with unknown function [Ricinus communis]
3 Hb_000033_040 0.1893484739 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027892_040 0.1928186733 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
5 Hb_000340_440 0.1949653849 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
6 Hb_002045_230 0.1980714018 - - Ammonium transporter 2 [Theobroma cacao]
7 Hb_004159_050 0.2080191637 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006351_110 0.2165274622 - - -
9 Hb_012586_020 0.2186707743 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
10 Hb_010589_050 0.2201201879 - - -
11 Hb_000270_730 0.220572189 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
12 Hb_039946_010 0.2207687485 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
13 Hb_001102_100 0.2219750586 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
14 Hb_000106_090 0.2224192739 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
15 Hb_010172_100 0.2227669834 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
16 Hb_000184_220 0.2230783328 - - hypothetical protein CISIN_1g0207781mg [Citrus sinensis]
17 Hb_000270_620 0.2234255371 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
18 Hb_004968_070 0.2239037785 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001842_080 0.22436345 - - -
20 Hb_065525_140 0.2261728997 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000078_020 Hb_000078_020 Hb_000316_100 Hb_000316_100 Hb_000078_020--Hb_000316_100 Hb_000033_040 Hb_000033_040 Hb_000078_020--Hb_000033_040 Hb_027892_040 Hb_027892_040 Hb_000078_020--Hb_027892_040 Hb_000340_440 Hb_000340_440 Hb_000078_020--Hb_000340_440 Hb_002045_230 Hb_002045_230 Hb_000078_020--Hb_002045_230 Hb_004159_050 Hb_004159_050 Hb_000078_020--Hb_004159_050 Hb_000175_130 Hb_000175_130 Hb_000316_100--Hb_000175_130 Hb_010172_100 Hb_010172_100 Hb_000316_100--Hb_010172_100 Hb_001842_080 Hb_001842_080 Hb_000316_100--Hb_001842_080 Hb_006351_110 Hb_006351_110 Hb_000316_100--Hb_006351_110 Hb_005908_040 Hb_005908_040 Hb_000316_100--Hb_005908_040 Hb_000316_100--Hb_027892_040 Hb_027337_120 Hb_027337_120 Hb_000033_040--Hb_027337_120 Hb_002784_150 Hb_002784_150 Hb_000033_040--Hb_002784_150 Hb_000033_040--Hb_027892_040 Hb_000589_160 Hb_000589_160 Hb_000033_040--Hb_000589_160 Hb_058143_010 Hb_058143_010 Hb_000033_040--Hb_058143_010 Hb_000045_210 Hb_000045_210 Hb_027892_040--Hb_000045_210 Hb_012053_010 Hb_012053_010 Hb_027892_040--Hb_012053_010 Hb_001266_030 Hb_001266_030 Hb_027892_040--Hb_001266_030 Hb_044653_060 Hb_044653_060 Hb_027892_040--Hb_044653_060 Hb_000431_160 Hb_000431_160 Hb_027892_040--Hb_000431_160 Hb_002784_140 Hb_002784_140 Hb_000340_440--Hb_002784_140 Hb_000340_440--Hb_000316_100 Hb_000094_110 Hb_000094_110 Hb_000340_440--Hb_000094_110 Hb_000340_440--Hb_000175_130 Hb_006132_050 Hb_006132_050 Hb_000340_440--Hb_006132_050 Hb_148850_010 Hb_148850_010 Hb_000340_440--Hb_148850_010 Hb_001052_030 Hb_001052_030 Hb_002045_230--Hb_001052_030 Hb_002326_180 Hb_002326_180 Hb_002045_230--Hb_002326_180 Hb_005841_040 Hb_005841_040 Hb_002045_230--Hb_005841_040 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_000352_140 Hb_000352_140 Hb_002045_230--Hb_000352_140 Hb_002045_230--Hb_000175_130 Hb_004159_050--Hb_006351_110 Hb_000270_620 Hb_000270_620 Hb_004159_050--Hb_000270_620 Hb_183612_080 Hb_183612_080 Hb_004159_050--Hb_183612_080 Hb_000103_550 Hb_000103_550 Hb_004159_050--Hb_000103_550 Hb_000920_320 Hb_000920_320 Hb_004159_050--Hb_000920_320 Hb_000617_110 Hb_000617_110 Hb_004159_050--Hb_000617_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.48937 0 0.390629 2.6912 1.54933 13.5171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3096 87.1993 25.3361 0.758417 0

CAGE analysis