Hb_002784_140

Information

Type -
Description -
Location Contig2784: 142130-149129
Sequence    

Annotation

kegg
ID rcu:RCOM_1452030
description glutamate receptor 2 plant, putative
nr
ID XP_002513033.1
description glutamate receptor 2 plant, putative [Ricinus communis]
swissprot
ID Q9C5V5
description Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2
trembl
ID B9RG81
description Glutamate receptor 2 plant, putative OS=Ricinus communis GN=RCOM_1452030 PE=4 SV=1
Gene Ontology
ID GO:0016020
description glutamate receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29101: 143504-143959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_140 0.0 - - glutamate receptor 2 plant, putative [Ricinus communis]
2 Hb_004414_040 0.1275276346 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
3 Hb_000340_440 0.1385918531 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
4 Hb_000563_310 0.1675656736 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
5 Hb_006132_050 0.1703272466 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
6 Hb_001277_080 0.1963251193 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
7 Hb_000316_100 0.2002724267 - - protein with unknown function [Ricinus communis]
8 Hb_005772_010 0.2011041307 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
9 Hb_058143_010 0.2090130825 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
10 Hb_000106_090 0.2113538187 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
11 Hb_000175_130 0.2145892259 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
12 Hb_001102_100 0.2153126696 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
13 Hb_148850_010 0.2219801881 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
14 Hb_002876_360 0.2228355297 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
15 Hb_000258_280 0.2236219806 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
16 Hb_000270_730 0.2242246008 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
17 Hb_000853_360 0.225567071 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
18 Hb_002784_150 0.226254532 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
19 Hb_027892_040 0.2271590058 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
20 Hb_000094_110 0.2278289093 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002784_140 Hb_002784_140 Hb_004414_040 Hb_004414_040 Hb_002784_140--Hb_004414_040 Hb_000340_440 Hb_000340_440 Hb_002784_140--Hb_000340_440 Hb_000563_310 Hb_000563_310 Hb_002784_140--Hb_000563_310 Hb_006132_050 Hb_006132_050 Hb_002784_140--Hb_006132_050 Hb_001277_080 Hb_001277_080 Hb_002784_140--Hb_001277_080 Hb_000316_100 Hb_000316_100 Hb_002784_140--Hb_000316_100 Hb_004414_040--Hb_001277_080 Hb_005772_010 Hb_005772_010 Hb_004414_040--Hb_005772_010 Hb_004414_040--Hb_000340_440 Hb_004414_040--Hb_006132_050 Hb_004968_070 Hb_004968_070 Hb_004414_040--Hb_004968_070 Hb_000340_440--Hb_000316_100 Hb_000094_110 Hb_000094_110 Hb_000340_440--Hb_000094_110 Hb_000175_130 Hb_000175_130 Hb_000340_440--Hb_000175_130 Hb_000340_440--Hb_006132_050 Hb_148850_010 Hb_148850_010 Hb_000340_440--Hb_148850_010 Hb_000563_310--Hb_000340_440 Hb_000563_310--Hb_005772_010 Hb_003579_020 Hb_003579_020 Hb_000563_310--Hb_003579_020 Hb_000258_280 Hb_000258_280 Hb_000563_310--Hb_000258_280 Hb_009880_010 Hb_009880_010 Hb_000563_310--Hb_009880_010 Hb_000853_360 Hb_000853_360 Hb_006132_050--Hb_000853_360 Hb_000106_090 Hb_000106_090 Hb_006132_050--Hb_000106_090 Hb_002326_180 Hb_002326_180 Hb_006132_050--Hb_002326_180 Hb_000617_050 Hb_000617_050 Hb_006132_050--Hb_000617_050 Hb_000777_060 Hb_000777_060 Hb_006132_050--Hb_000777_060 Hb_001616_020 Hb_001616_020 Hb_006132_050--Hb_001616_020 Hb_001277_080--Hb_004968_070 Hb_001102_100 Hb_001102_100 Hb_001277_080--Hb_001102_100 Hb_000270_730 Hb_000270_730 Hb_001277_080--Hb_000270_730 Hb_002784_150 Hb_002784_150 Hb_001277_080--Hb_002784_150 Hb_000316_100--Hb_000175_130 Hb_010172_100 Hb_010172_100 Hb_000316_100--Hb_010172_100 Hb_001842_080 Hb_001842_080 Hb_000316_100--Hb_001842_080 Hb_006351_110 Hb_006351_110 Hb_000316_100--Hb_006351_110 Hb_005908_040 Hb_005908_040 Hb_000316_100--Hb_005908_040 Hb_027892_040 Hb_027892_040 Hb_000316_100--Hb_027892_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.441838 0.11068 0.0275865 0.084807 0.291409 0.153227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.313 2.77368 0.369105 0.0339688 0

CAGE analysis