Hb_005772_010

Information

Type -
Description -
Location Contig5772: 10130-10765
Sequence    

Annotation

kegg
ID pop:POPTR_0016s13320g
description POPTRDRAFT_907261; hypothetical protein
nr
ID XP_012089781.1
description PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
swissprot
ID O80920
description Abscisic acid receptor PYL4 OS=Arabidopsis thaliana GN=PYL4 PE=1 SV=1
trembl
ID A0A067JS58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00422 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005772_010 0.0 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
2 Hb_004414_040 0.1951196699 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
3 Hb_000563_310 0.1969676798 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
4 Hb_002784_140 0.2011041307 - - glutamate receptor 2 plant, putative [Ricinus communis]
5 Hb_001102_100 0.207515968 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
6 Hb_002908_070 0.2110310301 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
7 Hb_000340_440 0.2191325789 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
8 Hb_004968_070 0.2408879151 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001277_080 0.2417617982 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
10 Hb_001266_030 0.2485692966 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
11 Hb_043623_010 0.2536219452 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
12 Hb_002784_150 0.2630370281 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
13 Hb_027892_040 0.2639724925 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
14 Hb_001741_070 0.2688662266 rubber biosynthesis Gene Name: SRPP7 unnamed protein product [Coffea canephora]
15 Hb_024650_040 0.2748920781 - - PREDICTED: josephin-like protein [Jatropha curcas]
16 Hb_001085_180 0.275280368 - - conserved hypothetical protein [Ricinus communis]
17 Hb_086692_020 0.2757911105 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
18 Hb_000258_280 0.2758970355 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
19 Hb_000270_730 0.276014816 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
20 Hb_012305_020 0.2769692032 - - beta-1,3-glucanase [Hevea brasiliensis]

Gene co-expression network

sample Hb_005772_010 Hb_005772_010 Hb_004414_040 Hb_004414_040 Hb_005772_010--Hb_004414_040 Hb_000563_310 Hb_000563_310 Hb_005772_010--Hb_000563_310 Hb_002784_140 Hb_002784_140 Hb_005772_010--Hb_002784_140 Hb_001102_100 Hb_001102_100 Hb_005772_010--Hb_001102_100 Hb_002908_070 Hb_002908_070 Hb_005772_010--Hb_002908_070 Hb_000340_440 Hb_000340_440 Hb_005772_010--Hb_000340_440 Hb_004414_040--Hb_002784_140 Hb_001277_080 Hb_001277_080 Hb_004414_040--Hb_001277_080 Hb_004414_040--Hb_000340_440 Hb_006132_050 Hb_006132_050 Hb_004414_040--Hb_006132_050 Hb_004968_070 Hb_004968_070 Hb_004414_040--Hb_004968_070 Hb_000563_310--Hb_002784_140 Hb_000563_310--Hb_000340_440 Hb_003579_020 Hb_003579_020 Hb_000563_310--Hb_003579_020 Hb_000258_280 Hb_000258_280 Hb_000563_310--Hb_000258_280 Hb_009880_010 Hb_009880_010 Hb_000563_310--Hb_009880_010 Hb_002784_140--Hb_000340_440 Hb_002784_140--Hb_006132_050 Hb_002784_140--Hb_001277_080 Hb_000316_100 Hb_000316_100 Hb_002784_140--Hb_000316_100 Hb_000270_730 Hb_000270_730 Hb_001102_100--Hb_000270_730 Hb_001266_030 Hb_001266_030 Hb_001102_100--Hb_001266_030 Hb_001102_100--Hb_001277_080 Hb_183612_080 Hb_183612_080 Hb_001102_100--Hb_183612_080 Hb_001102_100--Hb_002784_140 Hb_043623_010 Hb_043623_010 Hb_002908_070--Hb_043623_010 Hb_000622_080 Hb_000622_080 Hb_002908_070--Hb_000622_080 Hb_000289_070 Hb_000289_070 Hb_002908_070--Hb_000289_070 Hb_001449_100 Hb_001449_100 Hb_002908_070--Hb_001449_100 Hb_002908_070--Hb_001266_030 Hb_002908_070--Hb_009880_010 Hb_000340_440--Hb_000316_100 Hb_000094_110 Hb_000094_110 Hb_000340_440--Hb_000094_110 Hb_000175_130 Hb_000175_130 Hb_000340_440--Hb_000175_130 Hb_000340_440--Hb_006132_050 Hb_148850_010 Hb_148850_010 Hb_000340_440--Hb_148850_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2052 1.09289 5.42148 0.573183 10.055 4.35736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.60131 140.186 6.42407 3.93131 2.98755

CAGE analysis