Hb_003579_020

Information

Type -
Description -
Location Contig3579: 35346-39329
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17110g
description POPTRDRAFT_1078275; hypothetical protein
nr
ID XP_011004797.1
description PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
swissprot
ID Q9S9Z7
description Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=2 SV=1
trembl
ID B9H730
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s17110g PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36860: 35538-37012 , PASA_asmbl_36863: 37148-40612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003579_020 0.0 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
2 Hb_000122_040 0.1610154629 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
3 Hb_000103_060 0.1731138811 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
4 Hb_001214_140 0.1746809186 - - 60S ribosomal protein L27a, putative [Ricinus communis]
5 Hb_097007_010 0.1821938088 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
6 Hb_043623_010 0.1859179495 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
7 Hb_004005_010 0.1868499139 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
8 Hb_003044_090 0.1914061423 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
9 Hb_003638_080 0.19156208 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
10 Hb_000617_050 0.1998072986 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
11 Hb_176052_010 0.199915555 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_000438_220 0.200068904 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
13 Hb_000563_310 0.2014607672 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
14 Hb_002811_230 0.2023451023 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
15 Hb_001552_080 0.2036293533 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002301_130 0.2038268784 - - PREDICTED: uncharacterized protein LOC105138897 isoform X3 [Populus euphratica]
17 Hb_000329_020 0.2038685688 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
18 Hb_000258_280 0.2047846686 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
19 Hb_001565_030 0.2049755837 - - -
20 Hb_002742_050 0.2057315236 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]

Gene co-expression network

sample Hb_003579_020 Hb_003579_020 Hb_000122_040 Hb_000122_040 Hb_003579_020--Hb_000122_040 Hb_000103_060 Hb_000103_060 Hb_003579_020--Hb_000103_060 Hb_001214_140 Hb_001214_140 Hb_003579_020--Hb_001214_140 Hb_097007_010 Hb_097007_010 Hb_003579_020--Hb_097007_010 Hb_043623_010 Hb_043623_010 Hb_003579_020--Hb_043623_010 Hb_004005_010 Hb_004005_010 Hb_003579_020--Hb_004005_010 Hb_007943_140 Hb_007943_140 Hb_000122_040--Hb_007943_140 Hb_000438_220 Hb_000438_220 Hb_000122_040--Hb_000438_220 Hb_004109_020 Hb_004109_020 Hb_000122_040--Hb_004109_020 Hb_000122_040--Hb_001214_140 Hb_003638_080 Hb_003638_080 Hb_000122_040--Hb_003638_080 Hb_000699_040 Hb_000699_040 Hb_000122_040--Hb_000699_040 Hb_000617_050 Hb_000617_050 Hb_000103_060--Hb_000617_050 Hb_169246_010 Hb_169246_010 Hb_000103_060--Hb_169246_010 Hb_002811_230 Hb_002811_230 Hb_000103_060--Hb_002811_230 Hb_003029_080 Hb_003029_080 Hb_000103_060--Hb_003029_080 Hb_000103_060--Hb_000122_040 Hb_002716_090 Hb_002716_090 Hb_001214_140--Hb_002716_090 Hb_001214_140--Hb_000438_220 Hb_001638_260 Hb_001638_260 Hb_001214_140--Hb_001638_260 Hb_002742_050 Hb_002742_050 Hb_001214_140--Hb_002742_050 Hb_004052_020 Hb_004052_020 Hb_001214_140--Hb_004052_020 Hb_003641_020 Hb_003641_020 Hb_001214_140--Hb_003641_020 Hb_000236_460 Hb_000236_460 Hb_097007_010--Hb_000236_460 Hb_003549_020 Hb_003549_020 Hb_097007_010--Hb_003549_020 Hb_002320_060 Hb_002320_060 Hb_097007_010--Hb_002320_060 Hb_026398_010 Hb_026398_010 Hb_097007_010--Hb_026398_010 Hb_011311_010 Hb_011311_010 Hb_097007_010--Hb_011311_010 Hb_000085_330 Hb_000085_330 Hb_097007_010--Hb_000085_330 Hb_002908_070 Hb_002908_070 Hb_043623_010--Hb_002908_070 Hb_000258_280 Hb_000258_280 Hb_043623_010--Hb_000258_280 Hb_001449_090 Hb_001449_090 Hb_043623_010--Hb_001449_090 Hb_000203_020 Hb_000203_020 Hb_043623_010--Hb_000203_020 Hb_002811_090 Hb_002811_090 Hb_043623_010--Hb_002811_090 Hb_000212_210 Hb_000212_210 Hb_043623_010--Hb_000212_210 Hb_001818_020 Hb_001818_020 Hb_004005_010--Hb_001818_020 Hb_000526_150 Hb_000526_150 Hb_004005_010--Hb_000526_150 Hb_000580_080 Hb_000580_080 Hb_004005_010--Hb_000580_080 Hb_001269_270 Hb_001269_270 Hb_004005_010--Hb_001269_270 Hb_000970_010 Hb_000970_010 Hb_004005_010--Hb_000970_010 Hb_089839_020 Hb_089839_020 Hb_004005_010--Hb_089839_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.88724 11.6518 2.01277 3.36667 7.09689 11.4242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3843 60.1032 4.85593 5.34193 1.05294

CAGE analysis