Hb_001277_080

Information

Type -
Description -
Location Contig1277: 109066-109878
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15940g
description POPTRDRAFT_564901; hypothetical protein
nr
ID XP_012069730.1
description PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_080 0.0 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
2 Hb_004414_040 0.1622583569 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
3 Hb_004968_070 0.1723663279 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002784_140 0.1963251193 - - glutamate receptor 2 plant, putative [Ricinus communis]
5 Hb_001102_100 0.2064923643 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
6 Hb_000270_730 0.2102117445 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
7 Hb_002784_150 0.2281339505 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
8 Hb_000340_440 0.230820871 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
9 Hb_000316_100 0.231490361 - - protein with unknown function [Ricinus communis]
10 Hb_000078_020 0.2367628667 - - -
11 Hb_001085_180 0.2379791809 - - conserved hypothetical protein [Ricinus communis]
12 Hb_183612_080 0.2386414767 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
13 Hb_001842_080 0.2406190745 - - -
14 Hb_005772_010 0.2417617982 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
15 Hb_005520_010 0.2422065203 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
16 Hb_027892_040 0.2490776119 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
17 Hb_032202_250 0.2521971177 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
18 Hb_000398_030 0.2600988813 - - conserved hypothetical protein [Ricinus communis]
19 Hb_058143_010 0.2613443036 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
20 Hb_012573_010 0.2644314976 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]

Gene co-expression network

sample Hb_001277_080 Hb_001277_080 Hb_004414_040 Hb_004414_040 Hb_001277_080--Hb_004414_040 Hb_004968_070 Hb_004968_070 Hb_001277_080--Hb_004968_070 Hb_002784_140 Hb_002784_140 Hb_001277_080--Hb_002784_140 Hb_001102_100 Hb_001102_100 Hb_001277_080--Hb_001102_100 Hb_000270_730 Hb_000270_730 Hb_001277_080--Hb_000270_730 Hb_002784_150 Hb_002784_150 Hb_001277_080--Hb_002784_150 Hb_004414_040--Hb_002784_140 Hb_005772_010 Hb_005772_010 Hb_004414_040--Hb_005772_010 Hb_000340_440 Hb_000340_440 Hb_004414_040--Hb_000340_440 Hb_006132_050 Hb_006132_050 Hb_004414_040--Hb_006132_050 Hb_004414_040--Hb_004968_070 Hb_004968_070--Hb_002784_150 Hb_010589_050 Hb_010589_050 Hb_004968_070--Hb_010589_050 Hb_058143_010 Hb_058143_010 Hb_004968_070--Hb_058143_010 Hb_032202_250 Hb_032202_250 Hb_004968_070--Hb_032202_250 Hb_001842_080 Hb_001842_080 Hb_004968_070--Hb_001842_080 Hb_002784_140--Hb_000340_440 Hb_000563_310 Hb_000563_310 Hb_002784_140--Hb_000563_310 Hb_002784_140--Hb_006132_050 Hb_000316_100 Hb_000316_100 Hb_002784_140--Hb_000316_100 Hb_001102_100--Hb_000270_730 Hb_001266_030 Hb_001266_030 Hb_001102_100--Hb_001266_030 Hb_001102_100--Hb_005772_010 Hb_183612_080 Hb_183612_080 Hb_001102_100--Hb_183612_080 Hb_001102_100--Hb_002784_140 Hb_000270_730--Hb_001842_080 Hb_000398_030 Hb_000398_030 Hb_000270_730--Hb_000398_030 Hb_000270_730--Hb_183612_080 Hb_001922_080 Hb_001922_080 Hb_000270_730--Hb_001922_080 Hb_000270_730--Hb_000316_100 Hb_027892_040 Hb_027892_040 Hb_000270_730--Hb_027892_040 Hb_000033_040 Hb_000033_040 Hb_002784_150--Hb_000033_040 Hb_002784_150--Hb_058143_010 Hb_005520_010 Hb_005520_010 Hb_002784_150--Hb_005520_010 Hb_086692_020 Hb_086692_020 Hb_002784_150--Hb_086692_020 Hb_001214_080 Hb_001214_080 Hb_002784_150--Hb_001214_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30126 0.752626 0.0674243 0.151692 0.0827227 0.966808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.9158 16.9342 1.22332 0.0420279 0

CAGE analysis