Hb_086692_020

Information

Type -
Description -
Location Contig86692: 3818-4509
Sequence    

Annotation

kegg
ID rcu:RCOM_0000910
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_012089179.1
description PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID A0A067LCH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01453 PE=3 SV=1
Gene Ontology
ID GO:0004674
description protein kinase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086692_020 0.0 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
2 Hb_003398_140 0.1318869626 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_012305_020 0.1369396095 - - beta-1,3-glucanase [Hevea brasiliensis]
4 Hb_061383_010 0.144493189 - - beta-1,3-glucanase [Hevea brasiliensis]
5 Hb_001266_030 0.1526236807 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
6 Hb_012053_010 0.1631535949 - - srpk, putative [Ricinus communis]
7 Hb_001396_090 0.1735120911 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
8 Hb_000045_210 0.1858262973 - - -
9 Hb_000062_300 0.1874555649 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
10 Hb_027892_040 0.1887820618 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
11 Hb_028271_020 0.1913031764 - - acyl-CoA oxidase, putative [Ricinus communis]
12 Hb_044653_060 0.1999771442 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
13 Hb_000033_040 0.2011169578 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002150_050 0.2029193587 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000340_440 0.2029814026 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
16 Hb_002105_030 0.2037541433 - - -
17 Hb_001085_180 0.2039170209 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001449_090 0.204573613 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
19 Hb_002784_150 0.2062497808 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
20 Hb_000094_110 0.2069199798 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_086692_020 Hb_086692_020 Hb_003398_140 Hb_003398_140 Hb_086692_020--Hb_003398_140 Hb_012305_020 Hb_012305_020 Hb_086692_020--Hb_012305_020 Hb_061383_010 Hb_061383_010 Hb_086692_020--Hb_061383_010 Hb_001266_030 Hb_001266_030 Hb_086692_020--Hb_001266_030 Hb_012053_010 Hb_012053_010 Hb_086692_020--Hb_012053_010 Hb_001396_090 Hb_001396_090 Hb_086692_020--Hb_001396_090 Hb_000094_110 Hb_000094_110 Hb_003398_140--Hb_000094_110 Hb_003847_020 Hb_003847_020 Hb_003398_140--Hb_003847_020 Hb_002067_140 Hb_002067_140 Hb_003398_140--Hb_002067_140 Hb_028271_020 Hb_028271_020 Hb_003398_140--Hb_028271_020 Hb_026687_010 Hb_026687_010 Hb_003398_140--Hb_026687_010 Hb_012305_020--Hb_061383_010 Hb_001085_180 Hb_001085_180 Hb_012305_020--Hb_001085_180 Hb_183612_090 Hb_183612_090 Hb_012305_020--Hb_183612_090 Hb_012305_020--Hb_001266_030 Hb_000062_300 Hb_000062_300 Hb_012305_020--Hb_000062_300 Hb_002150_050 Hb_002150_050 Hb_061383_010--Hb_002150_050 Hb_061383_010--Hb_001396_090 Hb_038134_010 Hb_038134_010 Hb_061383_010--Hb_038134_010 Hb_061383_010--Hb_183612_090 Hb_044653_060 Hb_044653_060 Hb_001266_030--Hb_044653_060 Hb_001266_030--Hb_012053_010 Hb_000045_210 Hb_000045_210 Hb_001266_030--Hb_000045_210 Hb_027892_040 Hb_027892_040 Hb_001266_030--Hb_027892_040 Hb_000431_160 Hb_000431_160 Hb_001266_030--Hb_000431_160 Hb_000617_110 Hb_000617_110 Hb_001266_030--Hb_000617_110 Hb_002105_030 Hb_002105_030 Hb_012053_010--Hb_002105_030 Hb_002344_070 Hb_002344_070 Hb_012053_010--Hb_002344_070 Hb_000878_020 Hb_000878_020 Hb_012053_010--Hb_000878_020 Hb_003540_200 Hb_003540_200 Hb_012053_010--Hb_003540_200 Hb_000110_170 Hb_000110_170 Hb_012053_010--Hb_000110_170 Hb_000920_320 Hb_000920_320 Hb_001396_090--Hb_000920_320 Hb_000103_550 Hb_000103_550 Hb_001396_090--Hb_000103_550 Hb_003913_050 Hb_003913_050 Hb_001396_090--Hb_003913_050 Hb_000270_620 Hb_000270_620 Hb_001396_090--Hb_000270_620 Hb_001776_170 Hb_001776_170 Hb_001396_090--Hb_001776_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.72966 7.48576 3.72706 14.6528 8.31446 14.5976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7288 309.637 65.9842 39.9489 3.45026

CAGE analysis