Hb_002150_050

Information

Type -
Description -
Location Contig2150: 51022-51216
Sequence    

Annotation

kegg
ID rcu:RCOM_1691030
description hypothetical protein
nr
ID XP_002509922.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCN8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22227: 51211-51475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_061383_010 0.1606890214 - - beta-1,3-glucanase [Hevea brasiliensis]
3 Hb_027337_120 0.1741501227 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
4 Hb_001247_330 0.1862329132 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
5 Hb_001214_080 0.1930668372 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
6 Hb_000563_260 0.1955923778 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
7 Hb_001146_060 0.2013151738 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
8 Hb_002588_040 0.202338084 - - Pathogenesis-related protein 1 [Theobroma cacao]
9 Hb_086692_020 0.2029193587 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
10 Hb_012305_020 0.206109338 - - beta-1,3-glucanase [Hevea brasiliensis]
11 Hb_000352_160 0.2066129973 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000033_040 0.209257364 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000589_160 0.21529017 - - PREDICTED: expansin-A4 [Jatropha curcas]
14 Hb_007904_170 0.2174304371 - - PREDICTED: anther-specific protein BCP1 [Jatropha curcas]
15 Hb_002784_150 0.2215666307 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
16 Hb_001369_210 0.2231669157 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
17 Hb_001767_050 0.2260265445 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000046_620 0.2352089682 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
19 Hb_000042_100 0.2367732972 - - PREDICTED: uncharacterized protein LOC104448410 [Eucalyptus grandis]
20 Hb_010589_050 0.2373248424 - - -

Gene co-expression network

sample Hb_002150_050 Hb_002150_050 Hb_061383_010 Hb_061383_010 Hb_002150_050--Hb_061383_010 Hb_027337_120 Hb_027337_120 Hb_002150_050--Hb_027337_120 Hb_001247_330 Hb_001247_330 Hb_002150_050--Hb_001247_330 Hb_001214_080 Hb_001214_080 Hb_002150_050--Hb_001214_080 Hb_000563_260 Hb_000563_260 Hb_002150_050--Hb_000563_260 Hb_001146_060 Hb_001146_060 Hb_002150_050--Hb_001146_060 Hb_012305_020 Hb_012305_020 Hb_061383_010--Hb_012305_020 Hb_086692_020 Hb_086692_020 Hb_061383_010--Hb_086692_020 Hb_001396_090 Hb_001396_090 Hb_061383_010--Hb_001396_090 Hb_038134_010 Hb_038134_010 Hb_061383_010--Hb_038134_010 Hb_183612_090 Hb_183612_090 Hb_061383_010--Hb_183612_090 Hb_000042_100 Hb_000042_100 Hb_027337_120--Hb_000042_100 Hb_000589_160 Hb_000589_160 Hb_027337_120--Hb_000589_160 Hb_000033_040 Hb_000033_040 Hb_027337_120--Hb_000033_040 Hb_007426_050 Hb_007426_050 Hb_027337_120--Hb_007426_050 Hb_000352_160 Hb_000352_160 Hb_027337_120--Hb_000352_160 Hb_000703_050 Hb_000703_050 Hb_001247_330--Hb_000703_050 Hb_000962_080 Hb_000962_080 Hb_001247_330--Hb_000962_080 Hb_001767_050 Hb_001767_050 Hb_001247_330--Hb_001767_050 Hb_001247_330--Hb_001146_060 Hb_001247_330--Hb_001214_080 Hb_001369_210 Hb_001369_210 Hb_001247_330--Hb_001369_210 Hb_002784_150 Hb_002784_150 Hb_001214_080--Hb_002784_150 Hb_001214_080--Hb_000033_040 Hb_001214_080--Hb_001767_050 Hb_001214_080--Hb_000962_080 Hb_002588_040 Hb_002588_040 Hb_000563_260--Hb_002588_040 Hb_001348_230 Hb_001348_230 Hb_000563_260--Hb_001348_230 Hb_000563_260--Hb_001146_060 Hb_000563_260--Hb_000352_160 Hb_029879_090 Hb_029879_090 Hb_000563_260--Hb_029879_090 Hb_000563_260--Hb_001369_210 Hb_001146_060--Hb_002588_040 Hb_001146_060--Hb_001369_210 Hb_001146_060--Hb_001348_230 Hb_001146_060--Hb_000352_160 Hb_001146_060--Hb_001767_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.17342 0 1.48091 23.8806 10.9628 14.8802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.4414 794.969 260.378 43.0204 34.9074

CAGE analysis