Hb_001922_080

Information

Type -
Description -
Location Contig1922: 72933-74983
Sequence    

Annotation

kegg
ID rcu:RCOM_1581510
description Tellurite resistance protein tehA, putative
nr
ID XP_002513622.1
description Tellurite resistance protein tehA, putative [Ricinus communis]
swissprot
ID Q9FLV9
description S-type anion channel SLAH3 OS=Arabidopsis thaliana GN=SLAH3 PE=1 SV=1
trembl
ID B9RIQ3
description Tellurite resistance protein tehA, putative OS=Ricinus communis GN=RCOM_1581510 PE=4 SV=1
Gene Ontology
ID GO:0005623
description s-type anion channel slah2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19161: 73244-75085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_080 0.0 - - Tellurite resistance protein tehA, putative [Ricinus communis]
2 Hb_001842_080 0.1245951532 - - -
3 Hb_000398_030 0.1353355477 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010172_100 0.1415685512 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
5 Hb_000270_730 0.1428498901 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
6 Hb_000316_100 0.1449570658 - - protein with unknown function [Ricinus communis]
7 Hb_000544_110 0.1458101178 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
8 Hb_003376_210 0.1460587964 - - -
9 Hb_005137_020 0.146610198 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
10 Hb_072912_020 0.1509589198 - - abhydrolase domain containing, putative [Ricinus communis]
11 Hb_001186_070 0.1554124689 - - PREDICTED: F-box protein FBW2-like [Gossypium raimondii]
12 Hb_003095_070 0.1566091537 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
13 Hb_000329_660 0.1600836677 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
14 Hb_005908_040 0.1602093878 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
15 Hb_089100_030 0.1604499558 - - -
16 Hb_003211_050 0.162821469 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
17 Hb_001373_100 0.1664842558 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000032_350 0.1768274691 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000696_220 0.1792125571 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
20 Hb_001102_250 0.1793020469 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001922_080 Hb_001922_080 Hb_001842_080 Hb_001842_080 Hb_001922_080--Hb_001842_080 Hb_000398_030 Hb_000398_030 Hb_001922_080--Hb_000398_030 Hb_010172_100 Hb_010172_100 Hb_001922_080--Hb_010172_100 Hb_000270_730 Hb_000270_730 Hb_001922_080--Hb_000270_730 Hb_000316_100 Hb_000316_100 Hb_001922_080--Hb_000316_100 Hb_000544_110 Hb_000544_110 Hb_001922_080--Hb_000544_110 Hb_001842_080--Hb_000270_730 Hb_032202_250 Hb_032202_250 Hb_001842_080--Hb_032202_250 Hb_001842_080--Hb_000316_100 Hb_183612_080 Hb_183612_080 Hb_001842_080--Hb_183612_080 Hb_001842_080--Hb_010172_100 Hb_000398_030--Hb_000270_730 Hb_001799_040 Hb_001799_040 Hb_000398_030--Hb_001799_040 Hb_000398_030--Hb_001842_080 Hb_000032_350 Hb_000032_350 Hb_000398_030--Hb_000032_350 Hb_001373_100 Hb_001373_100 Hb_000398_030--Hb_001373_100 Hb_005908_040 Hb_005908_040 Hb_010172_100--Hb_005908_040 Hb_006351_110 Hb_006351_110 Hb_010172_100--Hb_006351_110 Hb_005137_020 Hb_005137_020 Hb_010172_100--Hb_005137_020 Hb_010172_100--Hb_000316_100 Hb_001007_050 Hb_001007_050 Hb_010172_100--Hb_001007_050 Hb_000270_730--Hb_183612_080 Hb_000270_730--Hb_000316_100 Hb_027892_040 Hb_027892_040 Hb_000270_730--Hb_027892_040 Hb_000175_130 Hb_000175_130 Hb_000316_100--Hb_000175_130 Hb_000316_100--Hb_006351_110 Hb_000316_100--Hb_005908_040 Hb_000316_100--Hb_027892_040 Hb_000544_110--Hb_005137_020 Hb_072912_020 Hb_072912_020 Hb_000544_110--Hb_072912_020 Hb_001102_250 Hb_001102_250 Hb_000544_110--Hb_001102_250 Hb_078633_010 Hb_078633_010 Hb_000544_110--Hb_078633_010 Hb_008066_040 Hb_008066_040 Hb_000544_110--Hb_008066_040 Hb_000544_110--Hb_005908_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.0766 0.584606 0.772025 11.935 14.8313 6.85393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.638 247.437 67.6077 3.43538 0.214103

CAGE analysis