Hb_032202_250

Information

Type -
Description -
Location Contig32202: 135482-137678
Sequence    

Annotation

kegg
ID pop:POPTR_0014s07190g
description POPTRDRAFT_1098128; F-box family protein
nr
ID XP_012083479.1
description PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
swissprot
ID Q9LEX0
description F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1
trembl
ID A0A067JXS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14458 PE=4 SV=1
Gene Ontology
ID GO:0009743
description f-box protein pp2-a13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34103: 135832-137682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_250 0.0 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
2 Hb_003226_240 0.1315722629 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
3 Hb_001842_080 0.1316895879 - - -
4 Hb_000300_210 0.1329223529 - - gd2b, putative [Ricinus communis]
5 Hb_001433_100 0.1357306588 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
6 Hb_034482_040 0.140875067 - - aspartate kinase, partial [Francisella tularensis]
7 Hb_002989_040 0.1559438538 - - hypothetical protein 1 [Hevea brasiliensis]
8 Hb_000258_180 0.1623303032 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
9 Hb_000270_730 0.1643087107 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
10 Hb_004968_070 0.1671682479 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003060_040 0.1692027161 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
12 Hb_023051_020 0.1703274153 - - -
13 Hb_027892_040 0.1797380076 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
14 Hb_000012_070 0.1810530012 - - cytochrome P450, putative [Ricinus communis]
15 Hb_183612_080 0.1814989901 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
16 Hb_001425_110 0.1831846985 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
17 Hb_001373_100 0.1853860041 - - conserved hypothetical protein [Ricinus communis]
18 Hb_141194_010 0.1857589887 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
19 Hb_183612_090 0.1873811016 - - -
20 Hb_000920_320 0.1900757425 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]

Gene co-expression network

sample Hb_032202_250 Hb_032202_250 Hb_003226_240 Hb_003226_240 Hb_032202_250--Hb_003226_240 Hb_001842_080 Hb_001842_080 Hb_032202_250--Hb_001842_080 Hb_000300_210 Hb_000300_210 Hb_032202_250--Hb_000300_210 Hb_001433_100 Hb_001433_100 Hb_032202_250--Hb_001433_100 Hb_034482_040 Hb_034482_040 Hb_032202_250--Hb_034482_040 Hb_002989_040 Hb_002989_040 Hb_032202_250--Hb_002989_040 Hb_003226_240--Hb_002989_040 Hb_003226_240--Hb_001433_100 Hb_003226_240--Hb_034482_040 Hb_023051_020 Hb_023051_020 Hb_003226_240--Hb_023051_020 Hb_000920_320 Hb_000920_320 Hb_003226_240--Hb_000920_320 Hb_000270_730 Hb_000270_730 Hb_001842_080--Hb_000270_730 Hb_001922_080 Hb_001922_080 Hb_001842_080--Hb_001922_080 Hb_000316_100 Hb_000316_100 Hb_001842_080--Hb_000316_100 Hb_183612_080 Hb_183612_080 Hb_001842_080--Hb_183612_080 Hb_010172_100 Hb_010172_100 Hb_001842_080--Hb_010172_100 Hb_000300_210--Hb_001433_100 Hb_000300_210--Hb_003226_240 Hb_001425_110 Hb_001425_110 Hb_000300_210--Hb_001425_110 Hb_000792_120 Hb_000792_120 Hb_000300_210--Hb_000792_120 Hb_000329_660 Hb_000329_660 Hb_000300_210--Hb_000329_660 Hb_001433_100--Hb_034482_040 Hb_008066_030 Hb_008066_030 Hb_001433_100--Hb_008066_030 Hb_001433_100--Hb_000329_660 Hb_034482_040--Hb_002989_040 Hb_034482_040--Hb_023051_020 Hb_141194_010 Hb_141194_010 Hb_034482_040--Hb_141194_010 Hb_002989_040--Hb_023051_020 Hb_001143_070 Hb_001143_070 Hb_002989_040--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_002989_040--Hb_000103_030 Hb_002989_040--Hb_000920_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.46175 0.193368 2.83142 0.693585 0.807824 3.29817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.8161 192.401 29.2771 4.07062 0.739883

CAGE analysis