Hb_000300_210

Information

Type -
Description -
Location Contig300: 187629-189886
Sequence    

Annotation

kegg
ID rcu:RCOM_1321020
description gd2b, putative
nr
ID XP_002525679.1
description gd2b, putative [Ricinus communis]
swissprot
ID Q4WYG7
description Protein pns1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pns1 PE=3 SV=1
trembl
ID B9SI60
description Gd2b, putative OS=Ricinus communis GN=RCOM_1321020 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein pns1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31565: 189356-189534
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_210 0.0 - - gd2b, putative [Ricinus communis]
2 Hb_001433_100 0.1221477176 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
3 Hb_032202_250 0.1329223529 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
4 Hb_003226_240 0.1363481802 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
5 Hb_001425_110 0.1515310952 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
6 Hb_000792_120 0.1516693308 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
7 Hb_000329_660 0.1566421817 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
8 Hb_001842_080 0.1643007932 - - -
9 Hb_012022_100 0.1677254289 - - CPRD49 family protein [Populus trichocarpa]
10 Hb_001373_100 0.1711957559 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001101_010 0.1753950999 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
12 Hb_034482_040 0.1765157594 - - aspartate kinase, partial [Francisella tularensis]
13 Hb_008066_030 0.178214608 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
14 Hb_000387_060 0.1815775502 - - -
15 Hb_000270_730 0.1867149982 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
16 Hb_023051_020 0.1910776931 - - -
17 Hb_000032_350 0.1922697202 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003198_010 0.1943018812 - - Valine--tRNA ligase [Gossypium arboreum]
19 Hb_003376_210 0.1990022546 - - -
20 Hb_027892_040 0.2018967001 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_210 Hb_000300_210 Hb_001433_100 Hb_001433_100 Hb_000300_210--Hb_001433_100 Hb_032202_250 Hb_032202_250 Hb_000300_210--Hb_032202_250 Hb_003226_240 Hb_003226_240 Hb_000300_210--Hb_003226_240 Hb_001425_110 Hb_001425_110 Hb_000300_210--Hb_001425_110 Hb_000792_120 Hb_000792_120 Hb_000300_210--Hb_000792_120 Hb_000329_660 Hb_000329_660 Hb_000300_210--Hb_000329_660 Hb_001433_100--Hb_003226_240 Hb_034482_040 Hb_034482_040 Hb_001433_100--Hb_034482_040 Hb_001433_100--Hb_032202_250 Hb_008066_030 Hb_008066_030 Hb_001433_100--Hb_008066_030 Hb_001433_100--Hb_000329_660 Hb_032202_250--Hb_003226_240 Hb_001842_080 Hb_001842_080 Hb_032202_250--Hb_001842_080 Hb_032202_250--Hb_034482_040 Hb_002989_040 Hb_002989_040 Hb_032202_250--Hb_002989_040 Hb_003226_240--Hb_002989_040 Hb_003226_240--Hb_034482_040 Hb_023051_020 Hb_023051_020 Hb_003226_240--Hb_023051_020 Hb_000920_320 Hb_000920_320 Hb_003226_240--Hb_000920_320 Hb_001504_320 Hb_001504_320 Hb_001425_110--Hb_001504_320 Hb_000387_060 Hb_000387_060 Hb_001425_110--Hb_000387_060 Hb_001425_110--Hb_000329_660 Hb_000264_130 Hb_000264_130 Hb_001425_110--Hb_000264_130 Hb_001842_120 Hb_001842_120 Hb_001425_110--Hb_001842_120 Hb_012022_100 Hb_012022_100 Hb_000792_120--Hb_012022_100 Hb_001579_140 Hb_001579_140 Hb_000792_120--Hb_001579_140 Hb_000792_120--Hb_000329_660 Hb_000792_120--Hb_000387_060 Hb_000792_120--Hb_008066_030 Hb_003211_050 Hb_003211_050 Hb_000329_660--Hb_003211_050 Hb_001373_100 Hb_001373_100 Hb_000329_660--Hb_001373_100 Hb_000329_660--Hb_000387_060 Hb_000329_660--Hb_003226_240 Hb_001276_060 Hb_001276_060 Hb_000329_660--Hb_001276_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.775663 0.173172 1.01006 0.150827 0.481802 0.132391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4276 21.0825 3.65783 0.515929 0.280977

CAGE analysis