Hb_009680_050

Information

Type -
Description -
Location Contig9680: 43409-44333
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009680_050 0.0 - - -
2 Hb_074590_010 0.1419423524 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
3 Hb_012725_090 0.1566207358 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
4 Hb_064997_010 0.1776533234 - - hypothetical protein JCGZ_19852 [Jatropha curcas]
5 Hb_094744_010 0.1783183699 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
6 Hb_001514_230 0.1786009168 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]
7 Hb_000300_010 0.1804001414 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_010417_020 0.1804795094 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
9 Hb_002078_050 0.1894844141 - - PREDICTED: protein kish-like [Nicotiana tomentosiformis]
10 Hb_000421_190 0.1922964966 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001473_120 0.1948864985 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_008066_040 0.1954455033 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
13 Hb_000352_140 0.1972555878 - - -
14 Hb_000048_050 0.1998469341 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
15 Hb_008725_200 0.2030314554 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
16 Hb_000599_090 0.203169919 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
17 Hb_092272_020 0.2040368691 - - hypothetical protein EUGRSUZ_F00278 [Eucalyptus grandis]
18 Hb_168501_010 0.2041745121 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
19 Hb_001935_030 0.2046177716 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000012_230 0.205373553 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]

Gene co-expression network

sample Hb_009680_050 Hb_009680_050 Hb_074590_010 Hb_074590_010 Hb_009680_050--Hb_074590_010 Hb_012725_090 Hb_012725_090 Hb_009680_050--Hb_012725_090 Hb_064997_010 Hb_064997_010 Hb_009680_050--Hb_064997_010 Hb_094744_010 Hb_094744_010 Hb_009680_050--Hb_094744_010 Hb_001514_230 Hb_001514_230 Hb_009680_050--Hb_001514_230 Hb_000300_010 Hb_000300_010 Hb_009680_050--Hb_000300_010 Hb_001473_120 Hb_001473_120 Hb_074590_010--Hb_001473_120 Hb_116264_010 Hb_116264_010 Hb_074590_010--Hb_116264_010 Hb_007810_030 Hb_007810_030 Hb_074590_010--Hb_007810_030 Hb_012395_200 Hb_012395_200 Hb_074590_010--Hb_012395_200 Hb_002660_160 Hb_002660_160 Hb_074590_010--Hb_002660_160 Hb_000048_050 Hb_000048_050 Hb_012725_090--Hb_000048_050 Hb_001473_130 Hb_001473_130 Hb_012725_090--Hb_001473_130 Hb_002154_050 Hb_002154_050 Hb_012725_090--Hb_002154_050 Hb_006935_050 Hb_006935_050 Hb_012725_090--Hb_006935_050 Hb_000157_010 Hb_000157_010 Hb_012725_090--Hb_000157_010 Hb_012725_090--Hb_064997_010 Hb_001153_220 Hb_001153_220 Hb_064997_010--Hb_001153_220 Hb_003018_190 Hb_003018_190 Hb_064997_010--Hb_003018_190 Hb_000836_070 Hb_000836_070 Hb_064997_010--Hb_000836_070 Hb_000997_400 Hb_000997_400 Hb_064997_010--Hb_000997_400 Hb_008311_010 Hb_008311_010 Hb_064997_010--Hb_008311_010 Hb_025214_130 Hb_025214_130 Hb_064997_010--Hb_025214_130 Hb_010417_020 Hb_010417_020 Hb_094744_010--Hb_010417_020 Hb_168501_010 Hb_168501_010 Hb_094744_010--Hb_168501_010 Hb_008066_040 Hb_008066_040 Hb_094744_010--Hb_008066_040 Hb_000012_230 Hb_000012_230 Hb_094744_010--Hb_000012_230 Hb_011457_170 Hb_011457_170 Hb_094744_010--Hb_011457_170 Hb_001935_030 Hb_001935_030 Hb_094744_010--Hb_001935_030 Hb_001514_230--Hb_064997_010 Hb_000260_310 Hb_000260_310 Hb_001514_230--Hb_000260_310 Hb_000377_060 Hb_000377_060 Hb_001514_230--Hb_000377_060 Hb_138585_060 Hb_138585_060 Hb_001514_230--Hb_138585_060 Hb_001638_020 Hb_001638_020 Hb_001514_230--Hb_001638_020 Hb_016604_020 Hb_016604_020 Hb_001514_230--Hb_016604_020 Hb_092272_020 Hb_092272_020 Hb_000300_010--Hb_092272_020 Hb_000144_090 Hb_000144_090 Hb_000300_010--Hb_000144_090 Hb_002248_050 Hb_002248_050 Hb_000300_010--Hb_002248_050 Hb_008725_200 Hb_008725_200 Hb_000300_010--Hb_008725_200 Hb_004968_060 Hb_004968_060 Hb_000300_010--Hb_004968_060 Hb_029223_030 Hb_029223_030 Hb_000300_010--Hb_029223_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5279 3.23162 0.136566 9.92625 5.85997 35.8615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0313 47.6839 43.1179 3.89347 0

CAGE analysis