Hb_029223_030

Information

Type -
Description -
Location Contig29223: 13228-14651
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12500g
description hypothetical protein
nr
ID XP_006381396.1
description hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
swissprot
ID Q7XSQ7
description Thioredoxin-like 3-3 OS=Oryza sativa subsp. japonica GN=Os04g0560200 PE=2 SV=2
trembl
ID B9MTG4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s12500g PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like 3-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30639: 13265-14644 , PASA_asmbl_30640: 13353-14644
cDNA
(Sanger)
(ID:Location)		 024_F09.ab1: 13265-14581

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029223_030 0.0 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
2 Hb_116349_150 0.1083020255 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
3 Hb_183963_020 0.1103345592 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
4 Hb_000563_590 0.1130285665 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
5 Hb_000032_260 0.1147912515 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
6 Hb_009026_050 0.1166857686 - - vacuolar ATPase F subunit [Hevea brasiliensis]
7 Hb_002326_030 0.1193143538 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
8 Hb_001454_330 0.1200979602 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
9 Hb_000089_130 0.1208368184 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
10 Hb_000107_650 0.1220499096 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
11 Hb_006787_040 0.1244000527 - - polyadenylate-binding protein, putative [Ricinus communis]
12 Hb_000193_230 0.1274428735 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
13 Hb_001478_050 0.1301570492 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
14 Hb_007021_020 0.1321596297 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
15 Hb_000599_090 0.1338150831 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
16 Hb_002025_320 0.134331325 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
17 Hb_102864_010 0.134524664 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
18 Hb_011139_020 0.1359757306 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
19 Hb_008408_030 0.1363743136 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
20 Hb_001191_100 0.1366922441 - - F-actin capping protein beta subunit [Populus trichocarpa]

Gene co-expression network

sample Hb_029223_030 Hb_029223_030 Hb_116349_150 Hb_116349_150 Hb_029223_030--Hb_116349_150 Hb_183963_020 Hb_183963_020 Hb_029223_030--Hb_183963_020 Hb_000563_590 Hb_000563_590 Hb_029223_030--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_029223_030--Hb_000032_260 Hb_009026_050 Hb_009026_050 Hb_029223_030--Hb_009026_050 Hb_002326_030 Hb_002326_030 Hb_029223_030--Hb_002326_030 Hb_002835_170 Hb_002835_170 Hb_116349_150--Hb_002835_170 Hb_006787_040 Hb_006787_040 Hb_116349_150--Hb_006787_040 Hb_000193_230 Hb_000193_230 Hb_116349_150--Hb_000193_230 Hb_001102_010 Hb_001102_010 Hb_116349_150--Hb_001102_010 Hb_000078_030 Hb_000078_030 Hb_116349_150--Hb_000078_030 Hb_025087_010 Hb_025087_010 Hb_183963_020--Hb_025087_010 Hb_000085_300 Hb_000085_300 Hb_183963_020--Hb_000085_300 Hb_001722_040 Hb_001722_040 Hb_183963_020--Hb_001722_040 Hb_001366_230 Hb_001366_230 Hb_183963_020--Hb_001366_230 Hb_007021_020 Hb_007021_020 Hb_183963_020--Hb_007021_020 Hb_002387_060 Hb_002387_060 Hb_183963_020--Hb_002387_060 Hb_001454_330 Hb_001454_330 Hb_000563_590--Hb_001454_330 Hb_001104_120 Hb_001104_120 Hb_000563_590--Hb_001104_120 Hb_000089_130 Hb_000089_130 Hb_000563_590--Hb_000089_130 Hb_011139_020 Hb_011139_020 Hb_000563_590--Hb_011139_020 Hb_001621_180 Hb_001621_180 Hb_000563_590--Hb_001621_180 Hb_000563_590--Hb_183963_020 Hb_005867_040 Hb_005867_040 Hb_000032_260--Hb_005867_040 Hb_000143_050 Hb_000143_050 Hb_000032_260--Hb_000143_050 Hb_000032_260--Hb_001621_180 Hb_000061_160 Hb_000061_160 Hb_000032_260--Hb_000061_160 Hb_005276_100 Hb_005276_100 Hb_000032_260--Hb_005276_100 Hb_000032_260--Hb_183963_020 Hb_009026_050--Hb_000089_130 Hb_009026_050--Hb_025087_010 Hb_009026_050--Hb_001366_230 Hb_000313_380 Hb_000313_380 Hb_009026_050--Hb_000313_380 Hb_002025_320 Hb_002025_320 Hb_009026_050--Hb_002025_320 Hb_009026_050--Hb_183963_020 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_012522_030 Hb_012522_030 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_001473_130 Hb_001473_130 Hb_002326_030--Hb_001473_130 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.6408 5.84307 4.37002 2.23091 30.506 81.166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.6386 102.396 66.6985 13.8114 3.25156

CAGE analysis