Hb_092272_020

Information

Type -
Description -
Location Contig92272: 6214-15534
Sequence    

Annotation

kegg
ID rcu:RCOM_0845260
description multidrug resistance pump, putative
nr
ID KCW66477.1
description hypothetical protein EUGRSUZ_F00278 [Eucalyptus grandis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A059BJU9
description MATE efflux family protein OS=Eucalyptus grandis GN=EUGRSUZ_F00278 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62542: 7202-7432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092272_020 0.0 - - hypothetical protein EUGRSUZ_F00278 [Eucalyptus grandis]
2 Hb_002660_160 0.1178467706 - - protein binding protein, putative [Ricinus communis]
3 Hb_007747_130 0.1214663342 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
4 Hb_001486_260 0.1228445842 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
5 Hb_004410_010 0.1234213828 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
6 Hb_000389_060 0.1236017778 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
7 Hb_004724_040 0.1315550424 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
8 Hb_000085_200 0.1353531784 - - ATP synthase subunit H protein [Hevea brasiliensis]
9 Hb_008408_030 0.1354031675 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
10 Hb_002749_100 0.1362232385 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
11 Hb_011161_040 0.1385175145 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
12 Hb_001584_300 0.1408254218 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
13 Hb_007047_010 0.1441616751 - - PREDICTED: expansin-A13 [Jatropha curcas]
14 Hb_000085_250 0.1444510391 - - sodium/hydrogen exchanger, putative [Ricinus communis]
15 Hb_001252_140 0.1449320281 - - catalytic, putative [Ricinus communis]
16 Hb_001133_020 0.1455865425 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
17 Hb_000300_010 0.1469690871 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_000362_210 0.1492771656 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
19 Hb_007766_010 0.1508722882 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
20 Hb_000599_090 0.1527175792 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_092272_020 Hb_092272_020 Hb_002660_160 Hb_002660_160 Hb_092272_020--Hb_002660_160 Hb_007747_130 Hb_007747_130 Hb_092272_020--Hb_007747_130 Hb_001486_260 Hb_001486_260 Hb_092272_020--Hb_001486_260 Hb_004410_010 Hb_004410_010 Hb_092272_020--Hb_004410_010 Hb_000389_060 Hb_000389_060 Hb_092272_020--Hb_000389_060 Hb_004724_040 Hb_004724_040 Hb_092272_020--Hb_004724_040 Hb_000362_210 Hb_000362_210 Hb_002660_160--Hb_000362_210 Hb_007021_020 Hb_007021_020 Hb_002660_160--Hb_007021_020 Hb_010172_030 Hb_010172_030 Hb_002660_160--Hb_010172_030 Hb_007047_010 Hb_007047_010 Hb_002660_160--Hb_007047_010 Hb_000085_250 Hb_000085_250 Hb_002660_160--Hb_000085_250 Hb_002749_100 Hb_002749_100 Hb_002660_160--Hb_002749_100 Hb_007747_130--Hb_004410_010 Hb_000184_180 Hb_000184_180 Hb_007747_130--Hb_000184_180 Hb_115919_020 Hb_115919_020 Hb_007747_130--Hb_115919_020 Hb_001252_140 Hb_001252_140 Hb_007747_130--Hb_001252_140 Hb_006469_060 Hb_006469_060 Hb_007747_130--Hb_006469_060 Hb_001621_180 Hb_001621_180 Hb_007747_130--Hb_001621_180 Hb_004102_190 Hb_004102_190 Hb_001486_260--Hb_004102_190 Hb_001486_260--Hb_000389_060 Hb_000085_200 Hb_000085_200 Hb_001486_260--Hb_000085_200 Hb_000408_050 Hb_000408_050 Hb_001486_260--Hb_000408_050 Hb_002875_080 Hb_002875_080 Hb_001486_260--Hb_002875_080 Hb_004410_010--Hb_001252_140 Hb_004410_010--Hb_002660_160 Hb_001104_120 Hb_001104_120 Hb_004410_010--Hb_001104_120 Hb_116264_010 Hb_116264_010 Hb_004410_010--Hb_116264_010 Hb_000787_070 Hb_000787_070 Hb_004410_010--Hb_000787_070 Hb_000389_060--Hb_004102_190 Hb_000389_060--Hb_002875_080 Hb_000389_060--Hb_001104_120 Hb_000061_480 Hb_000061_480 Hb_000389_060--Hb_000061_480 Hb_007766_010 Hb_007766_010 Hb_004724_040--Hb_007766_010 Hb_008408_030 Hb_008408_030 Hb_004724_040--Hb_008408_030 Hb_005455_070 Hb_005455_070 Hb_004724_040--Hb_005455_070 Hb_000258_430 Hb_000258_430 Hb_004724_040--Hb_000258_430 Hb_002326_030 Hb_002326_030 Hb_004724_040--Hb_002326_030 Hb_001366_230 Hb_001366_230 Hb_004724_040--Hb_001366_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.53428 0.101208 0.11459 1.71671 2.10379 3.95069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.67841 6.46436 3.74462 0.178615 0.227625

CAGE analysis