Hb_008408_030

Information

Type -
Description -
Location Contig8408: 53935-57072
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18100g
description POPTRDRAFT_800858; kinase family protein
nr
ID XP_012081775.1
description PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
swissprot
ID Q9ZUE0
description Proline-rich receptor-like protein kinase PERK12 OS=Arabidopsis thaliana GN=PERK12 PE=2 SV=2
trembl
ID A0A067K3M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18820 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase protein with adenine nucleotide alpha hydrolases-like isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60136: 53897-55034 , PASA_asmbl_60138: 55692-56264
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008408_030 0.0 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
2 Hb_008847_010 0.0924772936 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_006787_040 0.0929518483 - - polyadenylate-binding protein, putative [Ricinus communis]
4 Hb_001437_040 0.093976935 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
5 Hb_000787_070 0.0965915885 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
6 Hb_004724_040 0.0980435128 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
7 Hb_115919_020 0.1019325466 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
8 Hb_008016_010 0.1023103787 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
9 Hb_000078_030 0.1064535812 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012305_060 0.106977069 - - protein translocase, putative [Ricinus communis]
11 Hb_000193_230 0.108418699 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
12 Hb_005016_130 0.1106761616 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
13 Hb_000933_140 0.1112816849 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
14 Hb_116349_150 0.111558136 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
15 Hb_001366_230 0.1116880249 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011161_040 0.1130140974 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
17 Hb_183963_020 0.1170758448 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
18 Hb_002518_250 0.1172652319 - - conserved hypothetical protein 10 [Hevea brasiliensis]
19 Hb_000284_010 0.1182238376 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
20 Hb_002025_320 0.1185553642 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]

Gene co-expression network

sample Hb_008408_030 Hb_008408_030 Hb_008847_010 Hb_008847_010 Hb_008408_030--Hb_008847_010 Hb_006787_040 Hb_006787_040 Hb_008408_030--Hb_006787_040 Hb_001437_040 Hb_001437_040 Hb_008408_030--Hb_001437_040 Hb_000787_070 Hb_000787_070 Hb_008408_030--Hb_000787_070 Hb_004724_040 Hb_004724_040 Hb_008408_030--Hb_004724_040 Hb_115919_020 Hb_115919_020 Hb_008408_030--Hb_115919_020 Hb_048141_010 Hb_048141_010 Hb_008847_010--Hb_048141_010 Hb_005016_130 Hb_005016_130 Hb_008847_010--Hb_005016_130 Hb_010578_090 Hb_010578_090 Hb_008847_010--Hb_010578_090 Hb_008847_010--Hb_000787_070 Hb_003540_230 Hb_003540_230 Hb_008847_010--Hb_003540_230 Hb_000849_040 Hb_000849_040 Hb_006787_040--Hb_000849_040 Hb_000442_030 Hb_000442_030 Hb_006787_040--Hb_000442_030 Hb_000193_230 Hb_000193_230 Hb_006787_040--Hb_000193_230 Hb_000387_080 Hb_000387_080 Hb_006787_040--Hb_000387_080 Hb_001366_220 Hb_001366_220 Hb_006787_040--Hb_001366_220 Hb_001191_100 Hb_001191_100 Hb_006787_040--Hb_001191_100 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_098709_010 Hb_098709_010 Hb_001437_040--Hb_098709_010 Hb_007166_050 Hb_007166_050 Hb_001437_040--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_001437_040--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_001437_040--Hb_003086_110 Hb_003453_010 Hb_003453_010 Hb_001437_040--Hb_003453_010 Hb_000787_070--Hb_005016_130 Hb_000787_070--Hb_115919_020 Hb_006132_060 Hb_006132_060 Hb_000787_070--Hb_006132_060 Hb_001102_010 Hb_001102_010 Hb_000787_070--Hb_001102_010 Hb_024505_040 Hb_024505_040 Hb_000787_070--Hb_024505_040 Hb_000078_030 Hb_000078_030 Hb_000787_070--Hb_000078_030 Hb_007766_010 Hb_007766_010 Hb_004724_040--Hb_007766_010 Hb_005455_070 Hb_005455_070 Hb_004724_040--Hb_005455_070 Hb_000258_430 Hb_000258_430 Hb_004724_040--Hb_000258_430 Hb_002326_030 Hb_002326_030 Hb_004724_040--Hb_002326_030 Hb_001366_230 Hb_001366_230 Hb_004724_040--Hb_001366_230 Hb_000284_010 Hb_000284_010 Hb_115919_020--Hb_000284_010 Hb_115919_020--Hb_005016_130 Hb_115919_020--Hb_000078_030 Hb_115919_020--Hb_000193_230 Hb_002298_040 Hb_002298_040 Hb_115919_020--Hb_002298_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0505 0.719103 0.520188 2.72713 9.42083 18.2427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.4321 16.3992 12.7947 1.8301 0.923349

CAGE analysis