Hb_008847_010

Information

Type -
Description -
Location Contig8847: 25366-27475
Sequence    

Annotation

kegg
ID rcu:RCOM_0226100
description short chain alcohol dehydrogenase, putative (EC:1.1.1.53)
nr
ID XP_012087518.1
description PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
swissprot
ID Q94KL8
description Secoisolariciresinol dehydrogenase (Fragment) OS=Podophyllum peltatum PE=1 SV=1
trembl
ID A0A067JMA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24000 PE=3 SV=1
Gene Ontology
ID GO:0047044
description short chain alcohol

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61475: 26225-27478 , PASA_asmbl_61476: 26371-27478
cDNA
(Sanger)
(ID:Location)		 027_D10.ab1: 26371-27179

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008847_010 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
2 Hb_048141_010 0.0776464553 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
3 Hb_005016_130 0.0920451716 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
4 Hb_008408_030 0.0924772936 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
5 Hb_010578_090 0.111525129 - - HEV2.1 [Hevea brasiliensis]
6 Hb_000787_070 0.1141366972 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
7 Hb_003540_230 0.1143058032 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
8 Hb_115919_020 0.1157336509 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
9 Hb_000284_010 0.117527003 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
10 Hb_023226_090 0.1187042794 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
11 Hb_001999_120 0.1222499022 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
12 Hb_024505_040 0.1239132142 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
13 Hb_002387_060 0.1254936314 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012799_060 0.1264397679 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
15 Hb_006132_060 0.1272457725 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
16 Hb_000957_040 0.1300737095 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
17 Hb_000580_170 0.1307966347 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
18 Hb_001741_080 0.1309014089 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
19 Hb_003038_180 0.1309932913 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
20 Hb_000078_030 0.1319948299 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008847_010 Hb_008847_010 Hb_048141_010 Hb_048141_010 Hb_008847_010--Hb_048141_010 Hb_005016_130 Hb_005016_130 Hb_008847_010--Hb_005016_130 Hb_008408_030 Hb_008408_030 Hb_008847_010--Hb_008408_030 Hb_010578_090 Hb_010578_090 Hb_008847_010--Hb_010578_090 Hb_000787_070 Hb_000787_070 Hb_008847_010--Hb_000787_070 Hb_003540_230 Hb_003540_230 Hb_008847_010--Hb_003540_230 Hb_048141_010--Hb_003540_230 Hb_048141_010--Hb_010578_090 Hb_004787_090 Hb_004787_090 Hb_048141_010--Hb_004787_090 Hb_048141_010--Hb_005016_130 Hb_001631_080 Hb_001631_080 Hb_048141_010--Hb_001631_080 Hb_115919_020 Hb_115919_020 Hb_005016_130--Hb_115919_020 Hb_005016_130--Hb_000787_070 Hb_000078_030 Hb_000078_030 Hb_005016_130--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_005016_130--Hb_010578_090 Hb_000284_010 Hb_000284_010 Hb_005016_130--Hb_000284_010 Hb_006787_040 Hb_006787_040 Hb_008408_030--Hb_006787_040 Hb_001437_040 Hb_001437_040 Hb_008408_030--Hb_001437_040 Hb_008408_030--Hb_000787_070 Hb_004724_040 Hb_004724_040 Hb_008408_030--Hb_004724_040 Hb_008408_030--Hb_115919_020 Hb_029879_080 Hb_029879_080 Hb_010578_090--Hb_029879_080 Hb_002298_040 Hb_002298_040 Hb_010578_090--Hb_002298_040 Hb_010578_090--Hb_115919_020 Hb_010578_090--Hb_000284_010 Hb_000787_070--Hb_115919_020 Hb_006132_060 Hb_006132_060 Hb_000787_070--Hb_006132_060 Hb_001102_010 Hb_001102_010 Hb_000787_070--Hb_001102_010 Hb_024505_040 Hb_024505_040 Hb_000787_070--Hb_024505_040 Hb_000787_070--Hb_000078_030 Hb_002235_230 Hb_002235_230 Hb_003540_230--Hb_002235_230 Hb_029584_140 Hb_029584_140 Hb_003540_230--Hb_029584_140 Hb_000580_170 Hb_000580_170 Hb_003540_230--Hb_000580_170 Hb_003540_230--Hb_005016_130 Hb_012799_060 Hb_012799_060 Hb_003540_230--Hb_012799_060 Hb_003038_180 Hb_003038_180 Hb_003540_230--Hb_003038_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.7111 0.401608 1.83644 11.3799 36.4443 67.303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
121.624 65.0833 56.136 15.6679 2.35904

CAGE analysis