Hb_000300_010

Information

Type -
Description -
Location Contig300: 10184-12328
Sequence    

Annotation

kegg
ID rcu:RCOM_0845260
description multidrug resistance pump, putative
nr
ID XP_002530955.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9SY86
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0845260 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_010 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_092272_020 0.1469690871 - - hypothetical protein EUGRSUZ_F00278 [Eucalyptus grandis]
3 Hb_000144_090 0.1536287822 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
4 Hb_002248_050 0.1572252841 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
5 Hb_008725_200 0.160033364 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
6 Hb_004968_060 0.1625016513 - - conserved hypothetical protein [Ricinus communis]
7 Hb_029223_030 0.164261649 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
8 Hb_007747_130 0.165586282 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
9 Hb_000599_090 0.1673119672 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
10 Hb_004223_200 0.1680346112 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
11 Hb_074590_010 0.1704259671 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
12 Hb_000032_540 0.1776498851 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
13 Hb_134789_010 0.1795012615 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
14 Hb_011161_040 0.1800983828 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
15 Hb_009680_050 0.1804001414 - - -
16 Hb_000330_170 0.1807761047 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
17 Hb_033448_010 0.1816132528 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
18 Hb_004724_040 0.182095268 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
19 Hb_008408_030 0.1823188618 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
20 Hb_000252_040 0.1839601154 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]

Gene co-expression network

sample Hb_000300_010 Hb_000300_010 Hb_092272_020 Hb_092272_020 Hb_000300_010--Hb_092272_020 Hb_000144_090 Hb_000144_090 Hb_000300_010--Hb_000144_090 Hb_002248_050 Hb_002248_050 Hb_000300_010--Hb_002248_050 Hb_008725_200 Hb_008725_200 Hb_000300_010--Hb_008725_200 Hb_004968_060 Hb_004968_060 Hb_000300_010--Hb_004968_060 Hb_029223_030 Hb_029223_030 Hb_000300_010--Hb_029223_030 Hb_002660_160 Hb_002660_160 Hb_092272_020--Hb_002660_160 Hb_007747_130 Hb_007747_130 Hb_092272_020--Hb_007747_130 Hb_001486_260 Hb_001486_260 Hb_092272_020--Hb_001486_260 Hb_004410_010 Hb_004410_010 Hb_092272_020--Hb_004410_010 Hb_000389_060 Hb_000389_060 Hb_092272_020--Hb_000389_060 Hb_004724_040 Hb_004724_040 Hb_092272_020--Hb_004724_040 Hb_023226_010 Hb_023226_010 Hb_000144_090--Hb_023226_010 Hb_011161_040 Hb_011161_040 Hb_000144_090--Hb_011161_040 Hb_008173_120 Hb_008173_120 Hb_000144_090--Hb_008173_120 Hb_000032_540 Hb_000032_540 Hb_000144_090--Hb_000032_540 Hb_007193_100 Hb_007193_100 Hb_000144_090--Hb_007193_100 Hb_007317_060 Hb_007317_060 Hb_000144_090--Hb_007317_060 Hb_103873_010 Hb_103873_010 Hb_002248_050--Hb_103873_010 Hb_002301_320 Hb_002301_320 Hb_002248_050--Hb_002301_320 Hb_000421_190 Hb_000421_190 Hb_002248_050--Hb_000421_190 Hb_002835_170 Hb_002835_170 Hb_002248_050--Hb_002835_170 Hb_006787_040 Hb_006787_040 Hb_002248_050--Hb_006787_040 Hb_000329_600 Hb_000329_600 Hb_002248_050--Hb_000329_600 Hb_002687_050 Hb_002687_050 Hb_008725_200--Hb_002687_050 Hb_134789_010 Hb_134789_010 Hb_008725_200--Hb_134789_010 Hb_033448_010 Hb_033448_010 Hb_008725_200--Hb_033448_010 Hb_008725_200--Hb_000032_540 Hb_049415_020 Hb_049415_020 Hb_008725_200--Hb_049415_020 Hb_008725_200--Hb_000144_090 Hb_003327_060 Hb_003327_060 Hb_004968_060--Hb_003327_060 Hb_138413_010 Hb_138413_010 Hb_004968_060--Hb_138413_010 Hb_004223_200 Hb_004223_200 Hb_004968_060--Hb_004223_200 Hb_000914_060 Hb_000914_060 Hb_004968_060--Hb_000914_060 Hb_000563_530 Hb_000563_530 Hb_004968_060--Hb_000563_530 Hb_002200_120 Hb_002200_120 Hb_004968_060--Hb_002200_120 Hb_116349_150 Hb_116349_150 Hb_029223_030--Hb_116349_150 Hb_183963_020 Hb_183963_020 Hb_029223_030--Hb_183963_020 Hb_000563_590 Hb_000563_590 Hb_029223_030--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_029223_030--Hb_000032_260 Hb_009026_050 Hb_009026_050 Hb_029223_030--Hb_009026_050 Hb_002326_030 Hb_002326_030 Hb_029223_030--Hb_002326_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.852393 0.0115081 0 0.17893 0.418977 1.31834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.601663 1.59441 0.888899 0.0596749 0.104184

CAGE analysis