Hb_134789_010

Information

Type rubber biosynthesis
Description Gene Name: Geranyl geranyl diphosphate synthase
Location Contig134789: 179-606
Sequence    

Annotation

kegg
ID rcu:RCOM_0747390
description geranylgeranyl pyrophosphate synthase, putative (EC:2.5.1.30)
nr
ID BAF98299.1
description geranyl-diphosphate synthase [Hevea brasiliensis]
swissprot
ID Q5HZ00
description Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
trembl
ID A9ZN17
description Geranyl-diphosphate synthase OS=Hevea brasiliensis GN=HbGPS PE=2 SV=1
Gene Ontology
ID GO:0005739
description geranyl-diphosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134789_010 0.0 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
2 Hb_006787_040 0.1015070913 - - polyadenylate-binding protein, putative [Ricinus communis]
3 Hb_115919_020 0.1131440047 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
4 Hb_000442_030 0.1213876116 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007317_220 0.1223810257 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
6 Hb_000849_040 0.1233070127 - - transcription factor, putative [Ricinus communis]
7 Hb_008408_030 0.1234113353 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
8 Hb_043061_010 0.1242885314 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
9 Hb_008725_200 0.1320393559 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
10 Hb_002301_020 0.1369954313 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
11 Hb_024505_040 0.1371814097 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
12 Hb_001892_150 0.1381832968 - - -
13 Hb_000787_070 0.1400138511 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
14 Hb_003327_060 0.1409031246 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
15 Hb_000193_230 0.1422895891 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
16 Hb_000078_030 0.1433022456 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004072_010 0.144114638 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
18 Hb_001514_180 0.14476484 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
19 Hb_002687_050 0.1451584356 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
20 Hb_008016_010 0.1451988346 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_134789_010 Hb_134789_010 Hb_006787_040 Hb_006787_040 Hb_134789_010--Hb_006787_040 Hb_115919_020 Hb_115919_020 Hb_134789_010--Hb_115919_020 Hb_000442_030 Hb_000442_030 Hb_134789_010--Hb_000442_030 Hb_007317_220 Hb_007317_220 Hb_134789_010--Hb_007317_220 Hb_000849_040 Hb_000849_040 Hb_134789_010--Hb_000849_040 Hb_008408_030 Hb_008408_030 Hb_134789_010--Hb_008408_030 Hb_006787_040--Hb_000849_040 Hb_006787_040--Hb_000442_030 Hb_000193_230 Hb_000193_230 Hb_006787_040--Hb_000193_230 Hb_000387_080 Hb_000387_080 Hb_006787_040--Hb_000387_080 Hb_001366_220 Hb_001366_220 Hb_006787_040--Hb_001366_220 Hb_001191_100 Hb_001191_100 Hb_006787_040--Hb_001191_100 Hb_000284_010 Hb_000284_010 Hb_115919_020--Hb_000284_010 Hb_005016_130 Hb_005016_130 Hb_115919_020--Hb_005016_130 Hb_000078_030 Hb_000078_030 Hb_115919_020--Hb_000078_030 Hb_000787_070 Hb_000787_070 Hb_115919_020--Hb_000787_070 Hb_115919_020--Hb_000193_230 Hb_002298_040 Hb_002298_040 Hb_115919_020--Hb_002298_040 Hb_000442_030--Hb_000849_040 Hb_024505_040 Hb_024505_040 Hb_000442_030--Hb_024505_040 Hb_000442_030--Hb_000387_080 Hb_000563_540 Hb_000563_540 Hb_000442_030--Hb_000563_540 Hb_001017_090 Hb_001017_090 Hb_000442_030--Hb_001017_090 Hb_004852_020 Hb_004852_020 Hb_007317_220--Hb_004852_020 Hb_002374_340 Hb_002374_340 Hb_007317_220--Hb_002374_340 Hb_017134_040 Hb_017134_040 Hb_007317_220--Hb_017134_040 Hb_000933_140 Hb_000933_140 Hb_007317_220--Hb_000933_140 Hb_008016_010 Hb_008016_010 Hb_007317_220--Hb_008016_010 Hb_023675_010 Hb_023675_010 Hb_007317_220--Hb_023675_010 Hb_000304_020 Hb_000304_020 Hb_000849_040--Hb_000304_020 Hb_000849_040--Hb_024505_040 Hb_001606_070 Hb_001606_070 Hb_000849_040--Hb_001606_070 Hb_000849_040--Hb_000387_080 Hb_008847_010 Hb_008847_010 Hb_008408_030--Hb_008847_010 Hb_008408_030--Hb_006787_040 Hb_001437_040 Hb_001437_040 Hb_008408_030--Hb_001437_040 Hb_008408_030--Hb_000787_070 Hb_004724_040 Hb_004724_040 Hb_008408_030--Hb_004724_040 Hb_008408_030--Hb_115919_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
179.604 4.73502 1.27678 16.9777 140.057 384.84
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
293.729 245.947 225.933 20.1022 2.32177

CAGE analysis