Hb_094744_010

Information

Type -
Description -
Location Contig94744: 778-2237
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28800g
description putative disease resistance gene NBS-LRR family protein
nr
ID XP_011045818.1
description PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5GCE5
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0006s28800g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094744_010 0.0 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
2 Hb_010417_020 0.1297192236 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
3 Hb_168501_010 0.1461116341 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
4 Hb_008066_040 0.1466787824 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
5 Hb_000012_230 0.1474406539 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
6 Hb_011457_170 0.1533735017 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
7 Hb_001935_030 0.1661437542 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007810_030 0.1696284216 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
9 Hb_000367_280 0.1764749974 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
10 Hb_010589_040 0.1777490492 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009680_050 0.1783183699 - - -
12 Hb_015934_020 0.1790634929 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
13 Hb_000352_140 0.1820018326 - - -
14 Hb_004453_140 0.1820079148 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
15 Hb_004077_030 0.1824258675 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
16 Hb_001268_080 0.1846588309 - - catalytic, putative [Ricinus communis]
17 Hb_000329_600 0.1850443913 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
18 Hb_001396_190 0.1856440096 - - PREDICTED: uncharacterized protein LOC105123025 [Populus euphratica]
19 Hb_021409_090 0.1878151245 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
20 Hb_006831_030 0.1879916383 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_094744_010 Hb_094744_010 Hb_010417_020 Hb_010417_020 Hb_094744_010--Hb_010417_020 Hb_168501_010 Hb_168501_010 Hb_094744_010--Hb_168501_010 Hb_008066_040 Hb_008066_040 Hb_094744_010--Hb_008066_040 Hb_000012_230 Hb_000012_230 Hb_094744_010--Hb_000012_230 Hb_011457_170 Hb_011457_170 Hb_094744_010--Hb_011457_170 Hb_001935_030 Hb_001935_030 Hb_094744_010--Hb_001935_030 Hb_010417_020--Hb_011457_170 Hb_000157_010 Hb_000157_010 Hb_010417_020--Hb_000157_010 Hb_006594_020 Hb_006594_020 Hb_010417_020--Hb_006594_020 Hb_010589_040 Hb_010589_040 Hb_010417_020--Hb_010589_040 Hb_004453_140 Hb_004453_140 Hb_010417_020--Hb_004453_140 Hb_000367_280 Hb_000367_280 Hb_168501_010--Hb_000367_280 Hb_001396_190 Hb_001396_190 Hb_168501_010--Hb_001396_190 Hb_000809_030 Hb_000809_030 Hb_168501_010--Hb_000809_030 Hb_168501_010--Hb_001935_030 Hb_011245_020 Hb_011245_020 Hb_168501_010--Hb_011245_020 Hb_002045_230 Hb_002045_230 Hb_168501_010--Hb_002045_230 Hb_005137_020 Hb_005137_020 Hb_008066_040--Hb_005137_020 Hb_008066_040--Hb_001935_030 Hb_001268_080 Hb_001268_080 Hb_008066_040--Hb_001268_080 Hb_078633_010 Hb_078633_010 Hb_008066_040--Hb_078633_010 Hb_072912_020 Hb_072912_020 Hb_008066_040--Hb_072912_020 Hb_008066_040--Hb_002045_230 Hb_004077_030 Hb_004077_030 Hb_000012_230--Hb_004077_030 Hb_012423_050 Hb_012423_050 Hb_000012_230--Hb_012423_050 Hb_000012_230--Hb_001935_030 Hb_001473_120 Hb_001473_120 Hb_000012_230--Hb_001473_120 Hb_001584_300 Hb_001584_300 Hb_000012_230--Hb_001584_300 Hb_009265_060 Hb_009265_060 Hb_000012_230--Hb_009265_060 Hb_001488_100 Hb_001488_100 Hb_011457_170--Hb_001488_100 Hb_001946_320 Hb_001946_320 Hb_011457_170--Hb_001946_320 Hb_011457_170--Hb_004453_140 Hb_005000_290 Hb_005000_290 Hb_011457_170--Hb_005000_290 Hb_011457_170--Hb_000157_010 Hb_006831_030 Hb_006831_030 Hb_001935_030--Hb_006831_030 Hb_001935_030--Hb_001473_120 Hb_001329_210 Hb_001329_210 Hb_001935_030--Hb_001329_210 Hb_001123_120 Hb_001123_120 Hb_001935_030--Hb_001123_120 Hb_002078_460 Hb_002078_460 Hb_001935_030--Hb_002078_460 Hb_000069_100 Hb_000069_100 Hb_001935_030--Hb_000069_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187222 0 0 0.157901 0.153648 0.226736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.306429 0.626514 0.614143 0.0583805 0

CAGE analysis