Hb_000809_030

Information

Type desease resistance
Description Gene Name: RPW8
Location Contig809: 35763-40215
Sequence    

Annotation

kegg
ID pmum:103340234
description probable disease resistance protein At5g66900
nr
ID XP_008241852.1
description PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
swissprot
ID Q9FKZ2
description Probable disease resistance protein At5g66890 OS=Arabidopsis thaliana GN=At5g66890 PE=3 SV=1
trembl
ID U5GAN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11530g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59134: 39284-39627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_030 0.0 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
2 Hb_168501_010 0.1353850014 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_000123_160 0.1461596278 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
4 Hb_000318_490 0.150091186 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
5 Hb_001776_170 0.1533148024 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000103_550 0.1600653195 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
7 Hb_000788_080 0.1607205517 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
8 Hb_002759_240 0.1620779088 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
9 Hb_001232_140 0.1675599646 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
10 Hb_002876_370 0.1720275856 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
11 Hb_002045_230 0.1728362235 - - Ammonium transporter 2 [Theobroma cacao]
12 Hb_000270_620 0.1742226628 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
13 Hb_072912_020 0.1744675372 - - abhydrolase domain containing, putative [Ricinus communis]
14 Hb_002704_050 0.1765950002 - - cysteine-type peptidase, putative [Ricinus communis]
15 Hb_001894_170 0.1786597432 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
16 Hb_146225_010 0.1801316556 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
17 Hb_000373_180 0.1806556159 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
18 Hb_000592_060 0.1808737691 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
19 Hb_000976_250 0.1810853458 - - -
20 Hb_001159_200 0.1812502485 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000809_030 Hb_000809_030 Hb_168501_010 Hb_168501_010 Hb_000809_030--Hb_168501_010 Hb_000123_160 Hb_000123_160 Hb_000809_030--Hb_000123_160 Hb_000318_490 Hb_000318_490 Hb_000809_030--Hb_000318_490 Hb_001776_170 Hb_001776_170 Hb_000809_030--Hb_001776_170 Hb_000103_550 Hb_000103_550 Hb_000809_030--Hb_000103_550 Hb_000788_080 Hb_000788_080 Hb_000809_030--Hb_000788_080 Hb_000367_280 Hb_000367_280 Hb_168501_010--Hb_000367_280 Hb_001396_190 Hb_001396_190 Hb_168501_010--Hb_001396_190 Hb_001935_030 Hb_001935_030 Hb_168501_010--Hb_001935_030 Hb_011245_020 Hb_011245_020 Hb_168501_010--Hb_011245_020 Hb_002045_230 Hb_002045_230 Hb_168501_010--Hb_002045_230 Hb_062135_020 Hb_062135_020 Hb_000123_160--Hb_062135_020 Hb_000976_250 Hb_000976_250 Hb_000123_160--Hb_000976_250 Hb_146225_010 Hb_146225_010 Hb_000123_160--Hb_146225_010 Hb_000123_160--Hb_000318_490 Hb_000236_150 Hb_000236_150 Hb_000123_160--Hb_000236_150 Hb_000001_070 Hb_000001_070 Hb_000123_160--Hb_000001_070 Hb_001369_400 Hb_001369_400 Hb_000318_490--Hb_001369_400 Hb_030565_040 Hb_030565_040 Hb_000318_490--Hb_030565_040 Hb_000318_490--Hb_000976_250 Hb_004333_030 Hb_004333_030 Hb_000318_490--Hb_004333_030 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_002067_140 Hb_002067_140 Hb_001776_170--Hb_002067_140 Hb_001369_600 Hb_001369_600 Hb_001776_170--Hb_001369_600 Hb_012053_050 Hb_012053_050 Hb_001776_170--Hb_012053_050 Hb_001511_140 Hb_001511_140 Hb_001776_170--Hb_001511_140 Hb_002759_240 Hb_002759_240 Hb_001776_170--Hb_002759_240 Hb_000979_250 Hb_000979_250 Hb_001776_170--Hb_000979_250 Hb_000270_620 Hb_000270_620 Hb_000103_550--Hb_000270_620 Hb_000103_550--Hb_000318_490 Hb_001159_200 Hb_001159_200 Hb_000103_550--Hb_001159_200 Hb_003095_070 Hb_003095_070 Hb_000103_550--Hb_003095_070 Hb_006351_110 Hb_006351_110 Hb_000103_550--Hb_006351_110 Hb_001396_090 Hb_001396_090 Hb_000103_550--Hb_001396_090 Hb_000788_080--Hb_003095_070 Hb_005000_160 Hb_005000_160 Hb_000788_080--Hb_005000_160 Hb_000788_080--Hb_001511_140 Hb_000613_160 Hb_000613_160 Hb_000788_080--Hb_000613_160 Hb_000788_080--Hb_001159_200 Hb_009838_040 Hb_009838_040 Hb_000788_080--Hb_009838_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38084 0.00754922 0.17815 2.10993 0.533993 1.47421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.1923 14.0959 11.0128 1.47084 0.405463

CAGE analysis