Hb_000001_070

Information

Type -
Description -
Location Contig1: 112570-114233
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_070 0.0 - - -
2 Hb_000236_150 0.0915627936 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
3 Hb_000905_180 0.1059204558 - - 60S ribosomal protein L31A [Hevea brasiliensis]
4 Hb_000239_030 0.1128316785 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
5 Hb_002374_390 0.115517282 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
6 Hb_005914_200 0.1158065638 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
7 Hb_062135_020 0.1177600491 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
8 Hb_000123_160 0.118699285 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
9 Hb_003185_050 0.1250234571 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
10 Hb_001780_050 0.1266926782 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
11 Hb_001232_140 0.1317854635 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
12 Hb_002518_290 0.131915749 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
13 Hb_005663_120 0.1319969876 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
14 Hb_005474_060 0.1324782628 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
15 Hb_001157_010 0.132631482 - - deoxyhypusine synthase, putative [Ricinus communis]
16 Hb_005731_170 0.1334182705 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
17 Hb_032969_030 0.1336402069 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_000163_130 0.1343939299 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
19 Hb_000976_250 0.1356328884 - - -
20 Hb_000389_080 0.1357118099 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]

Gene co-expression network

sample Hb_000001_070 Hb_000001_070 Hb_000236_150 Hb_000236_150 Hb_000001_070--Hb_000236_150 Hb_000905_180 Hb_000905_180 Hb_000001_070--Hb_000905_180 Hb_000239_030 Hb_000239_030 Hb_000001_070--Hb_000239_030 Hb_002374_390 Hb_002374_390 Hb_000001_070--Hb_002374_390 Hb_005914_200 Hb_005914_200 Hb_000001_070--Hb_005914_200 Hb_062135_020 Hb_062135_020 Hb_000001_070--Hb_062135_020 Hb_000236_150--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_000236_150--Hb_001780_050 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_000236_150--Hb_000905_180 Hb_000163_130 Hb_000163_130 Hb_000236_150--Hb_000163_130 Hb_012539_020 Hb_012539_020 Hb_000236_150--Hb_012539_020 Hb_000905_180--Hb_000163_130 Hb_001016_090 Hb_001016_090 Hb_000905_180--Hb_001016_090 Hb_005474_060 Hb_005474_060 Hb_000905_180--Hb_005474_060 Hb_003185_050 Hb_003185_050 Hb_000905_180--Hb_003185_050 Hb_000905_180--Hb_002374_390 Hb_000115_230 Hb_000115_230 Hb_000239_030--Hb_000115_230 Hb_001157_010 Hb_001157_010 Hb_000239_030--Hb_001157_010 Hb_003326_020 Hb_003326_020 Hb_000239_030--Hb_003326_020 Hb_000915_120 Hb_000915_120 Hb_000239_030--Hb_000915_120 Hb_000239_030--Hb_000236_150 Hb_002217_450 Hb_002217_450 Hb_000239_030--Hb_002217_450 Hb_000181_300 Hb_000181_300 Hb_002374_390--Hb_000181_300 Hb_002374_390--Hb_001016_090 Hb_000364_030 Hb_000364_030 Hb_002374_390--Hb_000364_030 Hb_005731_170 Hb_005731_170 Hb_002374_390--Hb_005731_170 Hb_002374_390--Hb_003185_050 Hb_005914_200--Hb_001780_050 Hb_005914_200--Hb_012539_020 Hb_004754_070 Hb_004754_070 Hb_005914_200--Hb_004754_070 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250 Hb_002518_290 Hb_002518_290 Hb_062135_020--Hb_002518_290 Hb_005000_180 Hb_005000_180 Hb_062135_020--Hb_005000_180 Hb_000123_160 Hb_000123_160 Hb_062135_020--Hb_000123_160 Hb_062135_020--Hb_000976_250 Hb_062135_020--Hb_000236_150 Hb_000302_290 Hb_000302_290 Hb_062135_020--Hb_000302_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269329 0.475976 0.443111 0.758628 0.371509 1.28785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.49336 4.33976 3.22085 1.08567 0.274421

CAGE analysis