Hb_168501_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig168501: 647-1431
Sequence    

Annotation

kegg
ID rcu:RCOM_0602300
description leucine-rich repeat-containing protein, putative
nr
ID XP_002522332.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FKZ1
description Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1
trembl
ID B9S8L3
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0602300 PE=4 SV=1
Gene Ontology
ID GO:0043531
description probable disease resistance protein at5g66900

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168501_010 0.0 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_000367_280 0.1344543069 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
3 Hb_001396_190 0.1349635911 - - PREDICTED: uncharacterized protein LOC105123025 [Populus euphratica]
4 Hb_000809_030 0.1353850014 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
5 Hb_001935_030 0.1381388754 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011245_020 0.1391650317 - - Ferrochelatase [Medicago truncatula]
7 Hb_002045_230 0.1432394127 - - Ammonium transporter 2 [Theobroma cacao]
8 Hb_094744_010 0.1461116341 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
9 Hb_001268_080 0.1466208325 - - catalytic, putative [Ricinus communis]
10 Hb_007810_030 0.1469752905 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
11 Hb_003043_120 0.1497736016 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008066_040 0.1521433521 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
13 Hb_006831_030 0.1557366559 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
14 Hb_003929_120 0.1570320906 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
15 Hb_000398_160 0.1572147271 - - GDP-mannose transporter, putative [Ricinus communis]
16 Hb_005841_040 0.1575626846 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
17 Hb_005841_050 0.1594077673 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
18 Hb_010417_020 0.1606418928 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
19 Hb_000352_140 0.1627939966 - - -
20 Hb_088202_010 0.1664742118 - - hypothetical protein JCGZ_13241 [Jatropha curcas]

Gene co-expression network

sample Hb_168501_010 Hb_168501_010 Hb_000367_280 Hb_000367_280 Hb_168501_010--Hb_000367_280 Hb_001396_190 Hb_001396_190 Hb_168501_010--Hb_001396_190 Hb_000809_030 Hb_000809_030 Hb_168501_010--Hb_000809_030 Hb_001935_030 Hb_001935_030 Hb_168501_010--Hb_001935_030 Hb_011245_020 Hb_011245_020 Hb_168501_010--Hb_011245_020 Hb_002045_230 Hb_002045_230 Hb_168501_010--Hb_002045_230 Hb_001268_080 Hb_001268_080 Hb_000367_280--Hb_001268_080 Hb_001213_120 Hb_001213_120 Hb_000367_280--Hb_001213_120 Hb_000367_280--Hb_011245_020 Hb_007810_030 Hb_007810_030 Hb_000367_280--Hb_007810_030 Hb_004297_040 Hb_004297_040 Hb_000367_280--Hb_004297_040 Hb_078633_010 Hb_078633_010 Hb_000367_280--Hb_078633_010 Hb_003052_040 Hb_003052_040 Hb_001396_190--Hb_003052_040 Hb_001396_190--Hb_000367_280 Hb_001396_190--Hb_001268_080 Hb_001396_190--Hb_078633_010 Hb_008066_040 Hb_008066_040 Hb_001396_190--Hb_008066_040 Hb_000123_160 Hb_000123_160 Hb_000809_030--Hb_000123_160 Hb_000318_490 Hb_000318_490 Hb_000809_030--Hb_000318_490 Hb_001776_170 Hb_001776_170 Hb_000809_030--Hb_001776_170 Hb_000103_550 Hb_000103_550 Hb_000809_030--Hb_000103_550 Hb_000788_080 Hb_000788_080 Hb_000809_030--Hb_000788_080 Hb_006831_030 Hb_006831_030 Hb_001935_030--Hb_006831_030 Hb_001473_120 Hb_001473_120 Hb_001935_030--Hb_001473_120 Hb_001329_210 Hb_001329_210 Hb_001935_030--Hb_001329_210 Hb_001123_120 Hb_001123_120 Hb_001935_030--Hb_001123_120 Hb_002078_460 Hb_002078_460 Hb_001935_030--Hb_002078_460 Hb_000069_100 Hb_000069_100 Hb_001935_030--Hb_000069_100 Hb_003043_120 Hb_003043_120 Hb_011245_020--Hb_003043_120 Hb_011245_020--Hb_006831_030 Hb_011245_020--Hb_001268_080 Hb_011245_020--Hb_007810_030 Hb_017862_010 Hb_017862_010 Hb_011245_020--Hb_017862_010 Hb_001052_030 Hb_001052_030 Hb_002045_230--Hb_001052_030 Hb_002326_180 Hb_002326_180 Hb_002045_230--Hb_002326_180 Hb_005841_040 Hb_005841_040 Hb_002045_230--Hb_005841_040 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_000352_140 Hb_000352_140 Hb_002045_230--Hb_000352_140 Hb_000175_130 Hb_000175_130 Hb_002045_230--Hb_000175_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87318 0.0396599 0.400762 1.54495 0.979931 3.64356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.64239 12.1935 12.2872 1.78877 0.163701

CAGE analysis