Hb_000427_060

Information

Type -
Description -
Location Contig427: 131433-134393
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000427_060 0.0 - - -
2 Hb_002759_180 0.2360712916 - - PREDICTED: snakin-2-like [Jatropha curcas]
3 Hb_047823_010 0.2488928459 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
4 Hb_001545_040 0.2537161452 - - PREDICTED: ras-related protein Rab7-like [Malus domestica]
5 Hb_000563_310 0.2537345431 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
6 Hb_000103_060 0.2550842536 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
7 Hb_002301_130 0.2578910397 - - PREDICTED: uncharacterized protein LOC105138897 isoform X3 [Populus euphratica]
8 Hb_168878_010 0.2707838179 - - 60S ribosomal protein L32A [Hevea brasiliensis]
9 Hb_129924_010 0.2720589991 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
10 Hb_002007_300 0.2734063105 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
11 Hb_001776_090 0.2742671843 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
12 Hb_001584_060 0.2749592149 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
13 Hb_001459_080 0.2773704333 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
14 Hb_003029_080 0.2773834355 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
15 Hb_001085_090 0.278068993 - - PREDICTED: uncharacterized protein LOC105634186 [Jatropha curcas]
16 Hb_001558_090 0.2788520584 - - -
17 Hb_001178_100 0.2812690296 - - 60S acidic ribosomal protein P2-4 [Theobroma cacao]
18 Hb_011004_080 0.2822970281 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
19 Hb_002498_180 0.2832249452 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
20 Hb_009486_150 0.2842748705 - - 60S ribosomal protein L37a-2 [Medicago truncatula]

Gene co-expression network

sample Hb_000427_060 Hb_000427_060 Hb_002759_180 Hb_002759_180 Hb_000427_060--Hb_002759_180 Hb_047823_010 Hb_047823_010 Hb_000427_060--Hb_047823_010 Hb_001545_040 Hb_001545_040 Hb_000427_060--Hb_001545_040 Hb_000563_310 Hb_000563_310 Hb_000427_060--Hb_000563_310 Hb_000103_060 Hb_000103_060 Hb_000427_060--Hb_000103_060 Hb_002301_130 Hb_002301_130 Hb_000427_060--Hb_002301_130 Hb_005529_010 Hb_005529_010 Hb_002759_180--Hb_005529_010 Hb_000933_050 Hb_000933_050 Hb_002759_180--Hb_000933_050 Hb_017170_020 Hb_017170_020 Hb_002759_180--Hb_017170_020 Hb_000001_110 Hb_000001_110 Hb_002759_180--Hb_000001_110 Hb_000098_190 Hb_000098_190 Hb_002759_180--Hb_000098_190 Hb_052135_030 Hb_052135_030 Hb_002759_180--Hb_052135_030 Hb_007044_130 Hb_007044_130 Hb_047823_010--Hb_007044_130 Hb_047823_010--Hb_002301_130 Hb_003528_060 Hb_003528_060 Hb_047823_010--Hb_003528_060 Hb_013405_090 Hb_013405_090 Hb_047823_010--Hb_013405_090 Hb_003058_080 Hb_003058_080 Hb_047823_010--Hb_003058_080 Hb_129924_010 Hb_129924_010 Hb_047823_010--Hb_129924_010 Hb_001776_090 Hb_001776_090 Hb_001545_040--Hb_001776_090 Hb_011381_060 Hb_011381_060 Hb_001545_040--Hb_011381_060 Hb_042202_010 Hb_042202_010 Hb_001545_040--Hb_042202_010 Hb_000025_230 Hb_000025_230 Hb_001545_040--Hb_000025_230 Hb_028841_030 Hb_028841_030 Hb_001545_040--Hb_028841_030 Hb_168878_010 Hb_168878_010 Hb_001545_040--Hb_168878_010 Hb_002784_140 Hb_002784_140 Hb_000563_310--Hb_002784_140 Hb_000340_440 Hb_000340_440 Hb_000563_310--Hb_000340_440 Hb_005772_010 Hb_005772_010 Hb_000563_310--Hb_005772_010 Hb_003579_020 Hb_003579_020 Hb_000563_310--Hb_003579_020 Hb_000258_280 Hb_000258_280 Hb_000563_310--Hb_000258_280 Hb_009880_010 Hb_009880_010 Hb_000563_310--Hb_009880_010 Hb_000617_050 Hb_000617_050 Hb_000103_060--Hb_000617_050 Hb_169246_010 Hb_169246_010 Hb_000103_060--Hb_169246_010 Hb_000103_060--Hb_003579_020 Hb_002811_230 Hb_002811_230 Hb_000103_060--Hb_002811_230 Hb_003029_080 Hb_003029_080 Hb_000103_060--Hb_003029_080 Hb_000122_040 Hb_000122_040 Hb_000103_060--Hb_000122_040 Hb_011004_080 Hb_011004_080 Hb_002301_130--Hb_011004_080 Hb_009486_150 Hb_009486_150 Hb_002301_130--Hb_009486_150 Hb_000331_640 Hb_000331_640 Hb_002301_130--Hb_000331_640 Hb_000062_650 Hb_000062_650 Hb_002301_130--Hb_000062_650 Hb_002301_130--Hb_007044_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27646 0.702228 1.24848 0.196895 2.05233 0.880219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.382526 6.51162 0.341568 0.0415285 0.188562

CAGE analysis