Hb_001545_040

Information

Type -
Description -
Location Contig1545: 56223-59971
Sequence    

Annotation

kegg
ID mdm:103411684
description ras-related protein Rab7-like
nr
ID XP_008348542.1
description PREDICTED: ras-related protein Rab7-like [Malus domestica]
swissprot
ID -
description -
trembl
ID Q1KSH7
description Rab7 (Fragment) OS=Phaseolus vulgaris PE=2 SV=1
Gene Ontology
ID GO:0006810
description ras-related protein rab7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13352: 56078-73741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_040 0.0 - - PREDICTED: ras-related protein Rab7-like [Malus domestica]
2 Hb_001776_090 0.0905000678 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
3 Hb_011381_060 0.1027412455 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
4 Hb_042202_010 0.117032601 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
5 Hb_000025_230 0.1193372093 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
6 Hb_028841_030 0.1199710472 - - -
7 Hb_168878_010 0.1216307504 - - 60S ribosomal protein L32A [Hevea brasiliensis]
8 Hb_003939_080 0.1233615538 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001459_080 0.1236135111 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
10 Hb_003927_140 0.1256610835 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
11 Hb_002374_170 0.1260904281 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
12 Hb_001512_070 0.1261300804 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
13 Hb_003018_120 0.1315421353 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
14 Hb_008112_040 0.1327012788 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
15 Hb_013405_060 0.1328225247 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
16 Hb_000684_090 0.1330708829 transcription factor TF Family: S1Fa-like -
17 Hb_000297_230 0.1336792459 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
18 Hb_001085_090 0.1348431826 - - PREDICTED: uncharacterized protein LOC105634186 [Jatropha curcas]
19 Hb_001379_060 0.1349512282 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
20 Hb_007101_150 0.1370121278 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]

Gene co-expression network

sample Hb_001545_040 Hb_001545_040 Hb_001776_090 Hb_001776_090 Hb_001545_040--Hb_001776_090 Hb_011381_060 Hb_011381_060 Hb_001545_040--Hb_011381_060 Hb_042202_010 Hb_042202_010 Hb_001545_040--Hb_042202_010 Hb_000025_230 Hb_000025_230 Hb_001545_040--Hb_000025_230 Hb_028841_030 Hb_028841_030 Hb_001545_040--Hb_028841_030 Hb_168878_010 Hb_168878_010 Hb_001545_040--Hb_168878_010 Hb_001405_050 Hb_001405_050 Hb_001776_090--Hb_001405_050 Hb_007154_020 Hb_007154_020 Hb_001776_090--Hb_007154_020 Hb_001828_090 Hb_001828_090 Hb_001776_090--Hb_001828_090 Hb_001776_090--Hb_011381_060 Hb_001379_060 Hb_001379_060 Hb_001776_090--Hb_001379_060 Hb_011381_060--Hb_007154_020 Hb_145880_030 Hb_145880_030 Hb_011381_060--Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_011381_060--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_011381_060--Hb_002374_170 Hb_002045_040 Hb_002045_040 Hb_011381_060--Hb_002045_040 Hb_011381_060--Hb_028841_030 Hb_002477_240 Hb_002477_240 Hb_042202_010--Hb_002477_240 Hb_001754_150 Hb_001754_150 Hb_042202_010--Hb_001754_150 Hb_001214_030 Hb_001214_030 Hb_042202_010--Hb_001214_030 Hb_000417_110 Hb_000417_110 Hb_042202_010--Hb_000417_110 Hb_000684_090 Hb_000684_090 Hb_042202_010--Hb_000684_090 Hb_000025_530 Hb_000025_530 Hb_042202_010--Hb_000025_530 Hb_001459_080 Hb_001459_080 Hb_000025_230--Hb_001459_080 Hb_003607_150 Hb_003607_150 Hb_000025_230--Hb_003607_150 Hb_008112_040 Hb_008112_040 Hb_000025_230--Hb_008112_040 Hb_000025_230--Hb_168878_010 Hb_000025_230--Hb_002374_170 Hb_000025_230--Hb_011381_060 Hb_003363_110 Hb_003363_110 Hb_028841_030--Hb_003363_110 Hb_005186_050 Hb_005186_050 Hb_028841_030--Hb_005186_050 Hb_028841_030--Hb_003607_150 Hb_028841_030--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_028841_030--Hb_003069_010 Hb_168878_010--Hb_001459_080 Hb_168878_010--Hb_002374_170 Hb_004787_060 Hb_004787_060 Hb_168878_010--Hb_004787_060 Hb_001143_220 Hb_001143_220 Hb_168878_010--Hb_001143_220 Hb_168878_010--Hb_008112_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.53322 1.71544 3.73193 1.17449 4.60484 3.22738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.81349 11.4606 2.89838 0.827541 0.29169

CAGE analysis