Hb_011004_080

Information

Type -
Description -
Location Contig11004: 38020-43366
Sequence    

Annotation

kegg
ID cmo:103500584
description 60S ribosomal protein L37-3-like
nr
ID XP_004141772.1
description PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
swissprot
ID Q8LEM8
description 60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1
trembl
ID A0A0A0K941
description Ribosomal protein L37 OS=Cucumis sativus GN=Csa_7G446890 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l37-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03102: 38152-43366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011004_080 0.0 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
2 Hb_002301_130 0.0849997977 - - PREDICTED: uncharacterized protein LOC105138897 isoform X3 [Populus euphratica]
3 Hb_047823_010 0.1082337407 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
4 Hb_004052_020 0.1133535417 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
5 Hb_009486_150 0.1156797416 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
6 Hb_175215_010 0.1256116091 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
7 Hb_012753_230 0.1282074547 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
8 Hb_003528_060 0.1282247214 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
9 Hb_000062_650 0.1292377285 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
10 Hb_001538_120 0.1309910705 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
11 Hb_001214_140 0.1332944726 - - 60S ribosomal protein L27a, putative [Ricinus communis]
12 Hb_002742_050 0.1338307917 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]
13 Hb_003058_080 0.1360489339 - - Chaperonin 10 isoform 1 [Theobroma cacao]
14 Hb_010261_060 0.1374428925 - - unnamed protein product [Coffea canephora]
15 Hb_013405_090 0.1403425861 - - PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]
16 Hb_007044_130 0.1403922148 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
17 Hb_000331_640 0.1409508809 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
18 Hb_000057_070 0.1425165864 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
19 Hb_129924_010 0.1437187716 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
20 Hb_000123_230 0.1441766019 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011004_080 Hb_011004_080 Hb_002301_130 Hb_002301_130 Hb_011004_080--Hb_002301_130 Hb_047823_010 Hb_047823_010 Hb_011004_080--Hb_047823_010 Hb_004052_020 Hb_004052_020 Hb_011004_080--Hb_004052_020 Hb_009486_150 Hb_009486_150 Hb_011004_080--Hb_009486_150 Hb_175215_010 Hb_175215_010 Hb_011004_080--Hb_175215_010 Hb_012753_230 Hb_012753_230 Hb_011004_080--Hb_012753_230 Hb_002301_130--Hb_047823_010 Hb_002301_130--Hb_009486_150 Hb_000331_640 Hb_000331_640 Hb_002301_130--Hb_000331_640 Hb_000062_650 Hb_000062_650 Hb_002301_130--Hb_000062_650 Hb_007044_130 Hb_007044_130 Hb_002301_130--Hb_007044_130 Hb_047823_010--Hb_007044_130 Hb_003528_060 Hb_003528_060 Hb_047823_010--Hb_003528_060 Hb_013405_090 Hb_013405_090 Hb_047823_010--Hb_013405_090 Hb_003058_080 Hb_003058_080 Hb_047823_010--Hb_003058_080 Hb_129924_010 Hb_129924_010 Hb_047823_010--Hb_129924_010 Hb_004052_020--Hb_012753_230 Hb_000057_070 Hb_000057_070 Hb_004052_020--Hb_000057_070 Hb_004052_020--Hb_003058_080 Hb_012573_070 Hb_012573_070 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_009486_150--Hb_175215_010 Hb_009486_150--Hb_004052_020 Hb_021419_020 Hb_021419_020 Hb_009486_150--Hb_021419_020 Hb_000565_030 Hb_000565_030 Hb_009486_150--Hb_000565_030 Hb_007441_210 Hb_007441_210 Hb_009486_150--Hb_007441_210 Hb_128048_010 Hb_128048_010 Hb_175215_010--Hb_128048_010 Hb_001504_020 Hb_001504_020 Hb_175215_010--Hb_001504_020 Hb_004787_060 Hb_004787_060 Hb_175215_010--Hb_004787_060 Hb_175215_010--Hb_021419_020 Hb_000926_300 Hb_000926_300 Hb_175215_010--Hb_000926_300 Hb_002259_070 Hb_002259_070 Hb_012753_230--Hb_002259_070 Hb_012753_230--Hb_000948_210 Hb_019516_100 Hb_019516_100 Hb_012753_230--Hb_019516_100 Hb_001538_120 Hb_001538_120 Hb_012753_230--Hb_001538_120 Hb_007944_040 Hb_007944_040 Hb_012753_230--Hb_007944_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.639 25.0811 44.0777 25.7919 70.1363 45.875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.6373 199.066 16.6472 38.7383 14.8409

CAGE analysis