Hb_005529_010

Information

Type -
Description -
Location Contig5529: 5120-8801
Sequence    

Annotation

kegg
ID rcu:RCOM_1353860
description hypothetical protein
nr
ID XP_002519470.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0F1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1353860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005529_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_033080_010 0.1194882485 - - -
3 Hb_001198_090 0.1237557535 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
4 Hb_000001_110 0.1243177152 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000933_050 0.1341692263 - - protein binding protein, putative [Ricinus communis]
6 Hb_005333_040 0.1389308246 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
7 Hb_000307_170 0.1428284647 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
8 Hb_004884_220 0.1482385661 - - hypothetical protein 29 [Hevea brasiliensis]
9 Hb_004032_050 0.148318245 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
10 Hb_002609_030 0.1510130736 - - laccase, putative [Ricinus communis]
11 Hb_006501_150 0.1543087602 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002759_180 0.1554308863 - - PREDICTED: snakin-2-like [Jatropha curcas]
13 Hb_004032_060 0.1563295042 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
14 Hb_001352_090 0.1583162122 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
15 Hb_003126_040 0.1588617973 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000042_210 0.1602421259 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
17 Hb_000268_090 0.1603576174 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
18 Hb_000329_690 0.1614301388 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
19 Hb_002276_190 0.1624191955 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
20 Hb_000270_840 0.1629383953 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_005529_010 Hb_005529_010 Hb_033080_010 Hb_033080_010 Hb_005529_010--Hb_033080_010 Hb_001198_090 Hb_001198_090 Hb_005529_010--Hb_001198_090 Hb_000001_110 Hb_000001_110 Hb_005529_010--Hb_000001_110 Hb_000933_050 Hb_000933_050 Hb_005529_010--Hb_000933_050 Hb_005333_040 Hb_005333_040 Hb_005529_010--Hb_005333_040 Hb_000307_170 Hb_000307_170 Hb_005529_010--Hb_000307_170 Hb_033080_010--Hb_005333_040 Hb_006501_150 Hb_006501_150 Hb_033080_010--Hb_006501_150 Hb_000329_690 Hb_000329_690 Hb_033080_010--Hb_000329_690 Hb_000345_560 Hb_000345_560 Hb_033080_010--Hb_000345_560 Hb_006261_040 Hb_006261_040 Hb_033080_010--Hb_006261_040 Hb_007992_030 Hb_007992_030 Hb_033080_010--Hb_007992_030 Hb_010931_110 Hb_010931_110 Hb_001198_090--Hb_010931_110 Hb_008453_020 Hb_008453_020 Hb_001198_090--Hb_008453_020 Hb_002276_190 Hb_002276_190 Hb_001198_090--Hb_002276_190 Hb_130177_010 Hb_130177_010 Hb_001198_090--Hb_130177_010 Hb_001427_170 Hb_001427_170 Hb_001198_090--Hb_001427_170 Hb_000270_840 Hb_000270_840 Hb_000001_110--Hb_000270_840 Hb_000001_110--Hb_000933_050 Hb_000538_020 Hb_000538_020 Hb_000001_110--Hb_000538_020 Hb_001405_050 Hb_001405_050 Hb_000001_110--Hb_001405_050 Hb_000666_110 Hb_000666_110 Hb_000001_110--Hb_000666_110 Hb_000098_190 Hb_000098_190 Hb_000933_050--Hb_000098_190 Hb_004032_060 Hb_004032_060 Hb_000933_050--Hb_004032_060 Hb_000714_030 Hb_000714_030 Hb_000933_050--Hb_000714_030 Hb_001951_260 Hb_001951_260 Hb_000933_050--Hb_001951_260 Hb_000670_020 Hb_000670_020 Hb_000933_050--Hb_000670_020 Hb_005333_040--Hb_006501_150 Hb_005333_040--Hb_000270_840 Hb_005333_040--Hb_000538_020 Hb_005333_040--Hb_000329_690 Hb_004970_200 Hb_004970_200 Hb_005333_040--Hb_004970_200 Hb_000307_170--Hb_004032_060 Hb_004032_050 Hb_004032_050 Hb_000307_170--Hb_004032_050 Hb_000307_170--Hb_002276_190 Hb_009801_010 Hb_009801_010 Hb_000307_170--Hb_009801_010 Hb_000307_170--Hb_006261_040 Hb_000307_170--Hb_006501_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
134.753 22.875 73.1737 19.1599 266.714 84.4951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.4403 171.42 64.3859 11.5377 12.2688

CAGE analysis