Hb_000001_110

Information

Type -
Description -
Location Contig1: 185466-188473
Sequence    

Annotation

kegg
ID rcu:RCOM_0737410
description hypothetical protein
nr
ID XP_002527560.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNJ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0737410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00115: 186344-187848 , PASA_asmbl_00116: 187092-188455 , PASA_asmbl_00117: 187092-188455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000270_840 0.1086878652 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
3 Hb_000933_050 0.1143446392 - - protein binding protein, putative [Ricinus communis]
4 Hb_000538_020 0.1196134031 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
5 Hb_001405_050 0.1220672502 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
6 Hb_005529_010 0.1243177152 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000666_110 0.1263338317 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
8 Hb_001951_260 0.1308780466 - - 60S ribosomal protein L32, putative [Ricinus communis]
9 Hb_042202_010 0.1324630314 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
10 Hb_001348_070 0.1331439704 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_000670_020 0.1333671041 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
12 Hb_001379_060 0.1342207822 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
13 Hb_001776_090 0.1365518793 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
14 Hb_006096_040 0.1365792394 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
15 Hb_019962_030 0.1384060083 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
16 Hb_008112_040 0.1390720757 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
17 Hb_002687_140 0.1401109871 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
18 Hb_006501_150 0.1402216246 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000676_050 0.1415638582 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
20 Hb_004046_040 0.1415880637 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000001_110 Hb_000001_110 Hb_000270_840 Hb_000270_840 Hb_000001_110--Hb_000270_840 Hb_000933_050 Hb_000933_050 Hb_000001_110--Hb_000933_050 Hb_000538_020 Hb_000538_020 Hb_000001_110--Hb_000538_020 Hb_001405_050 Hb_001405_050 Hb_000001_110--Hb_001405_050 Hb_005529_010 Hb_005529_010 Hb_000001_110--Hb_005529_010 Hb_000666_110 Hb_000666_110 Hb_000001_110--Hb_000666_110 Hb_000270_840--Hb_000538_020 Hb_000270_360 Hb_000270_360 Hb_000270_840--Hb_000270_360 Hb_000905_190 Hb_000905_190 Hb_000270_840--Hb_000905_190 Hb_000392_270 Hb_000392_270 Hb_000270_840--Hb_000392_270 Hb_002997_170 Hb_002997_170 Hb_000270_840--Hb_002997_170 Hb_001369_650 Hb_001369_650 Hb_000270_840--Hb_001369_650 Hb_000098_190 Hb_000098_190 Hb_000933_050--Hb_000098_190 Hb_004032_060 Hb_004032_060 Hb_000933_050--Hb_004032_060 Hb_000714_030 Hb_000714_030 Hb_000933_050--Hb_000714_030 Hb_001951_260 Hb_001951_260 Hb_000933_050--Hb_001951_260 Hb_000670_020 Hb_000670_020 Hb_000933_050--Hb_000670_020 Hb_000107_390 Hb_000107_390 Hb_000538_020--Hb_000107_390 Hb_000538_020--Hb_000666_110 Hb_004722_060 Hb_004722_060 Hb_000538_020--Hb_004722_060 Hb_019962_030 Hb_019962_030 Hb_000538_020--Hb_019962_030 Hb_005527_050 Hb_005527_050 Hb_000538_020--Hb_005527_050 Hb_143766_090 Hb_143766_090 Hb_001405_050--Hb_143766_090 Hb_001776_090 Hb_001776_090 Hb_001405_050--Hb_001776_090 Hb_001405_050--Hb_019962_030 Hb_002681_040 Hb_002681_040 Hb_001405_050--Hb_002681_040 Hb_004204_070 Hb_004204_070 Hb_001405_050--Hb_004204_070 Hb_001405_050--Hb_000538_020 Hb_033080_010 Hb_033080_010 Hb_005529_010--Hb_033080_010 Hb_001198_090 Hb_001198_090 Hb_005529_010--Hb_001198_090 Hb_005529_010--Hb_000933_050 Hb_005333_040 Hb_005333_040 Hb_005529_010--Hb_005333_040 Hb_000307_170 Hb_000307_170 Hb_005529_010--Hb_000307_170 Hb_001504_150 Hb_001504_150 Hb_000666_110--Hb_001504_150 Hb_000666_110--Hb_019962_030 Hb_000141_060 Hb_000141_060 Hb_000666_110--Hb_000141_060 Hb_000666_110--Hb_000905_190 Hb_005503_030 Hb_005503_030 Hb_000666_110--Hb_005503_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.38932 2.1186 7.08848 1.55692 11.927 6.93801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.95702 10.1688 4.40551 1.09744 0.330637

CAGE analysis